Genomic analysis of putative novel serotypes of Tibet orbivirus isolated in Japan.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Apr 2021
Apr 2021
Historique:
received:
17
08
2020
accepted:
02
12
2020
pubmed:
7
2
2021
medline:
20
3
2021
entrez:
6
2
2021
Statut:
ppublish
Résumé
Tibet orbivirus (TIBOV) was initially isolated in Tibet in 2009 and subsequently in Guangdong, Hunan, and Yunnan, China. We document the first isolation of TIBOV outside of China: two TIBOV isolates from Culicoides collected in 2009 and 2010 in Kagoshima, Japan. Their complete genome sequences were also determined. Our results suggest that the two virus isolates are of novel serotypes, evident by variability within genome segment 2 encoding VP2. These new putative TIBOV serotypes will help with future virus surveillance and with the evaluation of its potential to cause disease in domestic ruminants.
Identifiants
pubmed: 33547486
doi: 10.1007/s00705-021-04966-7
pii: 10.1007/s00705-021-04966-7
doi:
Substances chimiques
RNA, Viral
0
Viral Proteins
0
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1151-1156Subventions
Organisme : Ministry of Agriculture, Forestry and Fisheries
ID : JP J008617. 18065101
Références
Attoui H, Mertens PPC, Becnel J et al (2011) Order reoviridae. In: King AMQ, Adams MJ, Lefkowitz EJ, Carstens EB (eds) Virus taxonomy: IXth report of the international committee on taxonomy of viruses. Elsevier, London, pp 541–637
Maclachlan NJ, Zientara S, Wilson WC et al (2019) Bluetongue and epizootic hemorrhagic disease viruses: recent developments with these globally re-emerging arboviral infections of ruminants. Curr Opin Virol 34:56–62. https://doi.org/10.1016/j.coviro.2018.12.005
doi: 10.1016/j.coviro.2018.12.005
pubmed: 30654271
Dennis SJ, Meyers AE, Hitzeroth II, Rybicki EP (2019) African horse sickness: a review of current understanding and vaccine development. Viruses 11:844. https://doi.org/10.3390/v11090844
doi: 10.3390/v11090844
pmcid: 6783979
Belhouchet M, Jaafar FM, Firth AE et al (2011) Detection of a fourth orbivirus non-structural protein. PLoS ONE 6:e25697. https://doi.org/10.1371/journal.pone.0025697
doi: 10.1371/journal.pone.0025697
pubmed: 22022432
pmcid: 3192121
Belaganahalli MN, Maan S, Maan NS et al (2015) Genetic characterization of the tick-borne orbiviruses. Viruses 7:2185–2209. https://doi.org/10.3390/v7052185
doi: 10.3390/v7052185
pubmed: 25928203
pmcid: 4452902
White JR, Boyd V, Brangwyn JK et al (2004) Characterisation and monitoring of neutralisation-resistant VP2 phenotypes in BTV-1 isolates from northern Australia collected over a twenty-year period. Vet Ital 40:508–512
pubmed: 20422578
Heidner HW, Rossitto PV, MacLachlan NJ (1990) Identification of four distinct neutralizing epitopes on bluetongue virus serotype 10 using neutralizing monoclonal antibodies and neutralization-escape variants. Virology 176:658–661. https://doi.org/10.1016/0042-6822(90)90041-O
doi: 10.1016/0042-6822(90)90041-O
pubmed: 1693250
Russell BL, Parbhoo N, Gildenhuys S (2018) Analysis of conserved, computationally predicted epitope regions for VP5 and VP7 across three orbiviruses. Bioinform Biol Insights 12:1177932218755348. https://doi.org/10.1177/1177932218755348
doi: 10.1177/1177932218755348
pubmed: 29434468
pmcid: 5802602
Luo L, Sabara MI (2005) Production of a recombinant major inner capsid protein for serological detection of epizootic hemorrhagic disease virus. Clin Diagn Lab Immunol 12:904–909. https://doi.org/10.1128/CDLI.12.8.904-909.2005
doi: 10.1128/CDLI.12.8.904-909.2005
pubmed: 16085906
pmcid: 1182188
Wilson WC, Ma HC, Venter EH et al (2000) Phylogenetic relationships of bluetongue viruses based on gene S7. Virus Res. 67:141–151. https://doi.org/10.1016/s0168-1702(00)00138-6
doi: 10.1016/s0168-1702(00)00138-6
pubmed: 10867193
Maan S, Maan NS, Ross-smith N et al (2008) Sequence analysis of bluetongue virus serotype 8 from the Netherlands 2006 and comparison to other European strains. Virology 377:308–318. https://doi.org/10.1016/j.virol.2008.04.028
doi: 10.1016/j.virol.2008.04.028
pubmed: 18570969
Li M, Zheng Y, Zhao G et al (2014) Tibet orbivirus, a novel orbivirus species isolated from Anopheles maculatus mosquitoes in Tibet, China. PLoS ONE 9:e88738. https://doi.org/10.1371/journal.pone.0088738
doi: 10.1371/journal.pone.0088738
pubmed: 24533145
pmcid: 3923044
Lei W, Guo X, Fu S et al (2015) Isolation of Tibet orbivirus, TIBOV, from Culicoides collected in Yunnan, China. PLoS ONE 10:e0136257. https://doi.org/10.1371/journal.pone.0136257
doi: 10.1371/journal.pone.0136257
pubmed: 26295700
pmcid: 4546636
Cao Y, Fu S, Song S et al (2019) Isolation and genome phylogenetic analysis of arthropod-borne viruses, including Akabane virus, from mosquitoes collected in Hunan province, China. Vector Borne Zoonotic Dis 19:62–72. https://doi.org/10.1089/vbz.2018.2267
doi: 10.1089/vbz.2018.2267
pubmed: 30526411
Wang J, Li H, He Y et al (2017) Isolation of Tibet orbivirus from Culicoides and associated infections in livestock in Yunnan, China. Virol J 14:105. https://doi.org/10.1186/s12985-017-0774-9
doi: 10.1186/s12985-017-0774-9
pubmed: 28595631
pmcid: 5488374
Kato T, Yanase T, Suzuki M et al (2016) Monitoring for bovine arboviruses in the most southwestern islands in Japan between 1994 and 2014. BMC Vet Res 12:125. https://doi.org/10.1186/s12917-016-0747-z
doi: 10.1186/s12917-016-0747-z
pubmed: 27342576
pmcid: 4921034
Murota K, Suda Y, Shirafuji H et al (2020) Identification and characterization of a novel orbivirus, Yonaguni orbivirus, isolated from cattle in the westernmost island of Japan. Arch Virol 165:2903–2908. https://doi.org/10.1007/s00705-020-04803-3
doi: 10.1007/s00705-020-04803-3
pubmed: 32894348
Li Z, Yu M, Zhang H et al (2005) Improved rapid amplification of cDNA ends (RACE) for mapping both the 5′ and 3′ terminal sequences of paramyxovirus genomes. J Virol Methods 130:154–156. https://doi.org/10.1016/j.jviromet.2005.06.022
doi: 10.1016/j.jviromet.2005.06.022
pubmed: 16076500
Attoui H, Billoir F, Cantaloube JF et al (2000) Strategies for the sequence determination of viral dsRNA genomes. J Virol Methods 89:147–158. https://doi.org/10.1016/S0166-0934(00)00212-3
doi: 10.1016/S0166-0934(00)00212-3
pubmed: 10996648
Lemoine F, Damien C, Lefort V et al (2019) NGPhylogeny.fr: new generation phylogenetic services for non-specialists. Nucleic Acids Res 47:W260–W265. https://doi.org/10.1093/nar/gkz303
doi: 10.1093/nar/gkz303
pubmed: 31028399
pmcid: 6602494
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874. https://doi.org/10.1093/molbev/msw054
doi: 10.1093/molbev/msw054
pubmed: 27004904
pmcid: 27004904
Sievers F, Higgins DG (2014) Clustal omega, accurate alignment of very large numbers of sequences. Methods Mol Biol 1079:105–116. https://doi.org/10.1007/978-1-62703-646-7_6
doi: 10.1007/978-1-62703-646-7_6
pubmed: 24170397
Xing S, Guo X, Zhang X et al (2017) A novel mosquito-borne reassortant orbivirus isolated from Xishuangbanna, China. Virol Sin 32:159–162. https://doi.org/10.1007/s12250-016-3886-2
doi: 10.1007/s12250-016-3886-2
pubmed: 28063012
Wu D, Tan Q, Zhang H et al (2020) Genomic and biological features of a novel orbivirus isolated from mosquitoes, in China. Virus Res 285:197990. https://doi.org/10.1016/j.virusres.2020.197990
doi: 10.1016/j.virusres.2020.197990
pubmed: 32437817
Anthony SJ, Maan S, Maan N et al (2009) Genetic and phylogenetic analysis of the outer-coat proteins VP2 and VP5 of epizootic haemorrhagic disease virus (EHDV): comparison of genetic and serological data to characterise the EHDV serogroup. Virus Res 145:200–221. https://doi.org/10.1016/j.virusres.2009.07.012
doi: 10.1016/j.virusres.2009.07.012
pubmed: 19632281
Maan S, Maan NS, Nomikou K et al (2011) Complete genome characterisation of a novel 26th bluetongue virus serotype from Kuwait. PLoS ONE 6:e26147. https://doi.org/10.1371/journal.pone.0026147
doi: 10.1371/journal.pone.0026147
pubmed: 22031822
pmcid: 3198726
Huismans H, van Staden V, Fick WC et al (2004) A comparison of different orbivirus proteins that could affect virulence and pathogenesis. Vet Ital 40:417–425
pubmed: 20422564
Otuka A (2013) Migration of rice planthoppers and their vectored re-emerging and novel rice viruses in East Asia. Front Microbiol 4:309. https://doi.org/10.3389/fmicb.2013.00309
doi: 10.3389/fmicb.2013.00309
pubmed: 24312081
pmcid: 3836001
Hayama Y, Moriguchi S, Yanase T et al (2016) Epidemiological analysis of bovine ephemeral fever in 2012–2013 in the subtropical islands of Japan. BMC Vet Res 12:47. https://doi.org/10.1186/s12917-016-0673-0
doi: 10.1186/s12917-016-0673-0
pubmed: 26956227
pmcid: 4784302
Kurogi H, Akiba K, Inaba Y, Matumoto M (1987) Isolation of akabane virus from the biting midge Culicoides oxystoma in Japan. Vet Microbiol 15:243–248. https://doi.org/10.1016/0378-1135(87)90078-2
doi: 10.1016/0378-1135(87)90078-2
pubmed: 3124329
Kurogi H, Suzuki T, Akashi H et al (1989) Isolation and preliminary characterization of an orbivirus of the Palyam serogroup from biting midge Culicoides oxystoma in Japan. Vet Microbiol 19:1–11. https://doi.org/10.1016/0378-1135(89)90086-2
doi: 10.1016/0378-1135(89)90086-2
pubmed: 2646823
Yanase T, Kato T, Kubo T et al (2005) Isolation of bovine arboviruses from Culicoides biting midges (Diptera: Ceratopogonidae) in southern Japan: 1985–2002. J Med Entomol 42:63–67. https://doi.org/10.1093/JMEDENT/42.1.63
doi: 10.1093/JMEDENT/42.1.63
pubmed: 15691010