Forecasting influenza activity using machine-learned mobility map.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
09 02 2021
09 02 2021
Historique:
received:
02
03
2019
accepted:
07
01
2021
entrez:
10
2
2021
pubmed:
11
2
2021
medline:
24
2
2021
Statut:
epublish
Résumé
Human mobility is a primary driver of infectious disease spread. However, existing data is limited in availability, coverage, granularity, and timeliness. Data-driven forecasts of disease dynamics are crucial for decision-making by health officials and private citizens alike. In this work, we focus on a machine-learned anonymized mobility map (hereon referred to as AMM) aggregated over hundreds of millions of smartphones and evaluate its utility in forecasting epidemics. We factor AMM into a metapopulation model to retrospectively forecast influenza in the USA and Australia. We show that the AMM model performs on-par with those based on commuter surveys, which are sparsely available and expensive. We also compare it with gravity and radiation based models of mobility, and find that the radiation model's performance is quite similar to AMM and commuter flows. Additionally, we demonstrate our model's ability to predict disease spread even across state boundaries. Our work contributes towards developing timely infectious disease forecasting at a global scale using human mobility datasets expanding their applications in the area of infectious disease epidemiology.
Identifiants
pubmed: 33563980
doi: 10.1038/s41467-021-21018-5
pii: 10.1038/s41467-021-21018-5
pmc: PMC7873234
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
726Subventions
Organisme : NIGMS NIH HHS
ID : R01 GM109718
Pays : United States
Organisme : NIGMS NIH HHS
ID : U01 GM070694
Pays : United States
Références
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2752-2757
pubmed: 29483256
Sci Rep. 2019 Jan 24;9(1):683
pubmed: 30679458
Epidemics. 2018 Mar;22:43-49
pubmed: 28256420
BMC Infect Dis. 2016 Jul 22;16:357
pubmed: 27449080
Science. 2010 Feb 19;327(5968):1018-21
pubmed: 20167789
Nat Commun. 2019 Oct 23;10(1):4817
pubmed: 31645563
BMC Infect Dis. 2010 Jun 29;10:190
pubmed: 20587041
Nature. 2008 Jun 5;453(7196):779-82
pubmed: 18528393
PLoS Comput Biol. 2017 Feb 10;13(2):e1005382
pubmed: 28187123
J Urban Health. 2011 Oct;88(5):982-95
pubmed: 21826584
Influenza Other Respir Viruses. 2014 May;8(3):309-16
pubmed: 24373466
Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21484-9
pubmed: 20018697
Science. 2012 Oct 12;338(6104):267-70
pubmed: 23066082
Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11887-92
pubmed: 26351662
J Infect Dis. 2016 Dec 1;214(suppl_4):S414-S420
pubmed: 28830104
Nat Commun. 2017 Dec 12;8(1):2069
pubmed: 29234011
Epidemics. 2018 Sep;24:26-33
pubmed: 29506911
Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3146-3154
pubmed: 30647115
Lancet. 2018 Mar 31;391(10127):1285-1300
pubmed: 29248255
Nature. 2012 Feb 26;484(7392):96-100
pubmed: 22367540
PLoS Comput Biol. 2016 Nov 17;12(11):e1005201
pubmed: 27855155
PLoS One. 2014 Jul 29;9(7):e102429
pubmed: 25072598
PLoS One. 2014 Apr 08;9(4):e94130
pubmed: 24714027
Nature. 2004 May 13;429(6988):180-4
pubmed: 15141212
PLoS Comput Biol. 2014 Jul 10;10(7):e1003716
pubmed: 25010676
Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20425-30
pubmed: 23184969
PLoS Comput Biol. 2015 Oct 29;11(10):e1004513
pubmed: 26513245
Sci Rep. 2015 Oct 19;5:15111
pubmed: 26478209
PLoS One. 2011 Jan 31;6(1):e16591
pubmed: 21304943
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jul;64(1 Pt 2):016132
pubmed: 11461356
PLoS Comput Biol. 2010 Apr 08;6(4):e1000736
pubmed: 20386735