Systematic Prioritization of Candidate Genes in Disease Loci Identifies

TRAFD1 celiac disease expression quantitative trait locus (eQTL) gene prioritization trans regulation

Journal

Frontiers in genetics
ISSN: 1664-8021
Titre abrégé: Front Genet
Pays: Switzerland
ID NLM: 101560621

Informations de publication

Date de publication:
2020
Historique:
received: 10 07 2020
accepted: 16 12 2020
entrez: 11 2 2021
pubmed: 12 2 2021
medline: 12 2 2021
Statut: epublish

Résumé

Celiac disease (CeD) is a complex T cell-mediated enteropathy induced by gluten. Although genome-wide association studies have identified numerous genomic regions associated with CeD, it is difficult to accurately pinpoint which genes in these loci are most likely to cause CeD. We used four different

Identifiants

pubmed: 33569077
doi: 10.3389/fgene.2020.562434
pmc: PMC7868554
doi:

Types de publication

Journal Article

Langues

eng

Pagination

562434

Informations de copyright

Copyright © 2021 van der Graaf, Zorro, Claringbould, Võsa, Aguirre-Gamboa, Li, Mooiweer, Ricaño-Ponce, Borek, Koning, Kooy-Winkelaar, Sollid, Qiao, Kumar, Li, Franke, Withoff, Wijmenga, Sanna, Jonkers and BIOS Consortium.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Adriaan van der Graaf (A)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Maria M Zorro (MM)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Annique Claringbould (A)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Urmo Võsa (U)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Estonian Genome Center, Institute of Genomics, University of Tartu, Tartu, Estonia.

Raúl Aguirre-Gamboa (R)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Chan Li (C)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Department of Immunology, K. G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.

Joram Mooiweer (J)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Isis Ricaño-Ponce (I)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Zuzanna Borek (Z)

Deutsches Rheumaforschungszentrum Berlin (DRFZ), An Institute of the Leibniz Association, Berlin, Germany.
Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Department of Gastroenterology, Infectious Diseases and Rheumatology, Berlin, Germany.

Frits Koning (F)

Department of Immunology, Leiden University, Leiden, Netherlands.

Yvonne Kooy-Winkelaar (Y)

Department of Immunology, Leiden University, Leiden, Netherlands.

Ludvig M Sollid (LM)

Department of Immunology, K. G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.

Shuo-Wang Qiao (SW)

Department of Immunology, K. G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.

Vinod Kumar (V)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Department of Internal Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, Netherlands.

Yang Li (Y)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Department of Internal Medicine and Radboud Center for Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, Netherlands.
Department of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, Helmholtz Centre for Infection Research, Hannover Medical School, Hanover, Germany.

Lude Franke (L)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Sebo Withoff (S)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.

Cisca Wijmenga (C)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Department of Immunology, K. G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.

Serena Sanna (S)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Istituto di Ricerca Genetica e Biomedica (IRGB) del Consiglio Nazionale delle Ricerche (CNR), Monserrato, Italy.

Iris Jonkers (I)

Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, Netherlands.
Department of Immunology, K. G. Jebsen Coeliac Disease Research Centre, University of Oslo, Oslo, Norway.

Classifications MeSH