Self-assembly of multi-component mitochondrial nucleoids via phase separation.


Journal

The EMBO journal
ISSN: 1460-2075
Titre abrégé: EMBO J
Pays: England
ID NLM: 8208664

Informations de publication

Date de publication:
15 03 2021
Historique:
revised: 08 01 2021
received: 27 10 2020
accepted: 19 01 2021
pubmed: 24 2 2021
medline: 21 10 2021
entrez: 23 2 2021
Statut: ppublish

Résumé

Mitochondria contain an autonomous and spatially segregated genome. The organizational unit of their genome is the nucleoid, which consists of mitochondrial DNA (mtDNA) and associated architectural proteins. Here, we show that phase separation is the primary physical mechanism for assembly and size control of the mitochondrial nucleoid (mt-nucleoid). The major mtDNA-binding protein TFAM spontaneously phase separates in vitro via weak, multivalent interactions into droplets with slow internal dynamics. TFAM and mtDNA form heterogenous, viscoelastic structures in vitro, which recapitulate the dynamics and behavior of mt-nucleoids in vivo. Mt-nucleoids coalesce into larger droplets in response to various forms of cellular stress, as evidenced by the enlarged and transcriptionally active nucleoids in mitochondria from patients with the premature aging disorder Hutchinson-Gilford Progeria Syndrome (HGPS). Our results point to phase separation as an evolutionarily conserved mechanism of genome organization.

Identifiants

pubmed: 33619770
doi: 10.15252/embj.2020107165
pmc: PMC7957436
doi:

Substances chimiques

DNA, Mitochondrial 0
DNA-Binding Proteins 0
Mitochondrial Proteins 0
TFAM protein, human 0
Transcription Factors 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

e107165

Subventions

Organisme : Intramural NIH HHS
ID : Z01 AG000727
Pays : United States
Organisme : Intramural NIH HHS
ID : Z01 BC010309
Pays : United States
Organisme : Intramural NIH HHS
ID : ZIA BC010309
Pays : United States
Organisme : NIGMS NIH HHS
ID : FI2 GM128585
Pays : United States

Informations de copyright

© 2021 This article is a U.S. Government work and is in the public domain in the USA.

Références

Cell Death Differ. 2016 Mar;23(3):380-92
pubmed: 26250910
Nature. 2015 Apr 23;520(7548):553-7
pubmed: 25642965
Science. 2018 Jul 27;361(6400):
pubmed: 29930091
Mol Cell. 2015 Oct 15;60(2):208-19
pubmed: 26412307
Methods Enzymol. 2004;375:393-414
pubmed: 14870680
Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18410-5
pubmed: 20930118
Trends Cell Biol. 2013 Sep;23(9):457-63
pubmed: 23721879
Biochim Biophys Acta. 2012 Sep-Oct;1819(9-10):914-20
pubmed: 22142616
Nat Commun. 2020 Jun 9;11(1):2905
pubmed: 32518228
Aging (Albany NY). 2012 Feb;4(2):119-32
pubmed: 22354768
Nat Cell Biol. 2013 Oct;15(10):1253-9
pubmed: 23995731
PLoS Genet. 2019 Jun 6;15(6):e1008085
pubmed: 31170154
Mol Cell. 2013 Jan 10;49(1):121-32
pubmed: 23201127
Nature. 2014 Jan 16;505(7483):335-43
pubmed: 24429632
Nat Commun. 2014;5:3077
pubmed: 24435062
Nature. 2017 Jul 13;547(7662):241-245
pubmed: 28636597
Science. 2016 Jul 15;353(6296):aaf5549
pubmed: 27418514
Cell. 2014 Jan 30;156(3):400-7
pubmed: 24485450
Nat Rev Mol Cell Biol. 2018 Feb;19(2):77-92
pubmed: 28792006
Toxicol Appl Pharmacol. 2016 Jul 1;302:31-40
pubmed: 27102948
Nat Commun. 2012;3:1013
pubmed: 22910359
Nature. 2019 Nov;575(7782):390-394
pubmed: 31618757
Nat Rev Mol Cell Biol. 2017 May;18(5):285-298
pubmed: 28225081
Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11288-93
pubmed: 26305956
Biochim Biophys Acta. 2009 May;1787(5):312-9
pubmed: 19010300
Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13534-9
pubmed: 21808029
Nature. 2017 Jul 13;547(7662):236-240
pubmed: 28636604
Cell Metab. 2013 Mar 5;17(3):399-410
pubmed: 23473034
Cell. 2019 Oct 3;179(2):470-484.e21
pubmed: 31543265
Biochim Biophys Acta. 2010 Apr;1804(4):996-1010
pubmed: 20100603
Cell. 2018 Dec 13;175(7):1842-1855.e16
pubmed: 30449618
Nucleic Acids Res. 2020 May 21;48(9):4614-4626
pubmed: 32313950
Proc Natl Acad Sci U S A. 1997 Jan 21;94(2):514-9
pubmed: 9012815
Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6136-41
pubmed: 22474357
Nat Rev Mol Cell Biol. 2012 Oct;13(10):659-71
pubmed: 22992591
Science. 2018 Jul 27;361(6400):412-415
pubmed: 29930094
Mol Cell. 2019 Oct 17;76(2):295-305
pubmed: 31604601
Science. 2009 Jun 26;324(5935):1729-32
pubmed: 19460965
Mol Cell. 2016 Mar 3;61(5):654-666
pubmed: 26942670
Nat Struct Mol Biol. 2011 Oct 30;18(11):1281-9
pubmed: 22037172
Free Radic Biol Med. 2000 Aug;29(3-4):222-30
pubmed: 11035250
Mol Cell Biol. 2011 Dec;31(24):4994-5010
pubmed: 22006021
Biophys J. 2003 Oct;85(4):2519-24
pubmed: 14507714
J Clin Invest. 2013 Mar;123(3):951-7
pubmed: 23454757
Cell. 2015 Sep 24;163(1):123-33
pubmed: 26406374
Oncogene. 2009 Nov 5;28(44):3880-91
pubmed: 19684617
Trends Cell Biol. 2007 Dec;17(12):586-92
pubmed: 17981466
Cell. 2020 Apr 16;181(2):306-324.e28
pubmed: 32302570
Mol Biol Cell. 2007 Sep;18(9):3225-36
pubmed: 17581862
Nucleic Acids Res. 2009 Nov;37(20):6765-83
pubmed: 19755502
FASEB J. 2000 Feb;14(2):312-8
pubmed: 10657987
Aging Cell. 2016 Apr;15(2):279-90
pubmed: 26663466
Trends Biotechnol. 2019 Jul;37(7):761-774
pubmed: 30654913
Annu Rev Cell Dev Biol. 2014;30:39-58
pubmed: 25288112
Science. 2018 Jul 27;361(6400):
pubmed: 29930090
Chromosoma. 2012 Oct;121(5):447-64
pubmed: 22610065
Cell Rep. 2014 Jul 10;8(1):66-74
pubmed: 24981867
Genet Med. 2015 Apr;17(4):279-84
pubmed: 25232845
J Struct Biol. 2001 Oct;136(1):53-66
pubmed: 11858707
Cell. 2020 Apr 16;181(2):346-361.e17
pubmed: 32302572
Nat Struct Mol Biol. 2011 Oct 30;18(11):1290-6
pubmed: 22037171
Trends Genet. 2003 Dec;19(12):709-16
pubmed: 14642752
Theor Biol Med Model. 2007 Apr 12;4:15
pubmed: 17430588
Cell. 2020 Oct 1;183(1):28-45
pubmed: 32976797
Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11863-8
pubmed: 23821750
EMBO J. 2021 Mar 15;40(6):e107165
pubmed: 33619770
Am J Physiol Cell Physiol. 2011 Apr;300(4):C723-42
pubmed: 21209361
Nat Rev Genet. 2005 May;6(5):389-402
pubmed: 15861210
Genes Dev. 2019 Dec 1;33(23-24):1619-1634
pubmed: 31594803
Curr Protoc Toxicol. 2016 Feb 01;67:20.11.1-20.11.25
pubmed: 26828332
J Biol Chem. 2008 Feb 8;283(6):3665-3675
pubmed: 18063578
Annu Rev Biochem. 2016 Jun 2;85:133-60
pubmed: 27023847
Science. 2005 Jul 15;309(5733):481-4
pubmed: 16020738
Nucleus. 2017 Sep 3;8(5):573-582
pubmed: 28857661
Cell. 2005 Feb 25;120(4):483-95
pubmed: 15734681
J Proteomics. 2013 Oct 8;91:466-77
pubmed: 23969228
Mol Cell Biol. 2015 Jan;35(1):211-23
pubmed: 25348719
Cell. 2016 Jun 2;165(6):1361-1374
pubmed: 27259148
Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4334-9
pubmed: 21368180
Nature. 2020 Feb;578(7794):301-305
pubmed: 32025038
Nat Rev Genet. 2005 Nov;6(11):815-25
pubmed: 16304597
EMBO Rep. 2019 Jan;20(1):
pubmed: 30523075
J Cell Sci. 1999 Jul;112 ( Pt 14):2419-30
pubmed: 10381397
Cell. 2016 Jun 16;165(7):1686-1697
pubmed: 27212236
Nature. 2004 May 27;429(6990):417-23
pubmed: 15164064
Cell. 2020 Apr 16;181(2):325-345.e28
pubmed: 32302571
Exp Cell Res. 2005 Feb 15;303(2):432-46
pubmed: 15652355
Development. 2019 Sep 25;146(19):
pubmed: 31554625
Nat Struct Mol Biol. 2018 Sep;25(9):833-840
pubmed: 30127355
Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7225-7235
pubmed: 32179693
Nat Rev Microbiol. 2010 Mar;8(3):185-95
pubmed: 20140026

Auteurs

Marina Feric (M)

National Cancer Institute, NIH, Bethesda, MD, USA.
National Institute of General Medical Sciences, NIH, Bethesda, MD, USA.

Tyler G Demarest (TG)

National Institute on Aging, NIH, Baltimore, MD, USA.

Jane Tian (J)

National Institute on Aging, NIH, Baltimore, MD, USA.

Deborah L Croteau (DL)

National Institute on Aging, NIH, Baltimore, MD, USA.

Vilhelm A Bohr (VA)

National Institute on Aging, NIH, Baltimore, MD, USA.

Tom Misteli (T)

National Cancer Institute, NIH, Bethesda, MD, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH