High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes.
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
25 02 2021
25 02 2021
Historique:
received:
24
03
2020
accepted:
04
02
2021
entrez:
26
2
2021
pubmed:
27
2
2021
medline:
15
12
2021
Statut:
epublish
Résumé
Genomes retain records of demographic changes and evolutionary forces that shape species and populations. Remnant populations of African buffalo (Syncerus caffer) in South Africa, with varied histories, provide an opportunity to investigate signatures left in their genomes by past events, both recent and ancient. Here, we produce 40 low coverage (7.14×) genome sequences of Cape buffalo (S. c. caffer) from four protected areas in South Africa. Genome-wide heterozygosity was the highest for any mammal for which these data are available, while differences in individual inbreeding coefficients reflected the severity of historical bottlenecks and current census sizes in each population. PSMC analysis revealed multiple changes in N
Identifiants
pubmed: 33633171
doi: 10.1038/s41598-021-83823-8
pii: 10.1038/s41598-021-83823-8
pmc: PMC7907399
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
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