Collagen IV
X-ray crystallography
atomic force microscopy (AFM)
collagen
extracellular matrix
genetic disease
Journal
The Journal of biological chemistry
ISSN: 1083-351X
Titre abrégé: J Biol Chem
Pays: United States
ID NLM: 2985121R
Informations de publication
Date de publication:
Historique:
received:
29
12
2020
revised:
17
03
2021
accepted:
24
03
2021
pubmed:
30
3
2021
medline:
21
8
2021
entrez:
29
3
2021
Statut:
ppublish
Résumé
Our recent work identified a genetic variant of the α345 hexamer of the collagen IV scaffold that is present in patients with glomerular basement membrane diseases, Goodpasture's disease (GP) and Alport syndrome (AS), and phenocopies of AS in knock-in mice. To understand the context of this "Zurich" variant, an 8-amino acid appendage, we developed a construct of the WT α345 hexamer using the single-chain NC1 trimer technology, which allowed us to solve a crystal structure of this key connection module. The α345 hexamer structure revealed a ring of 12 chloride ions at the trimer-trimer interface, analogous to the collagen α121 hexamer, and the location of the 170 AS variants. The hexamer surface is marked by multiple pores and crevices that are potentially accessible to small molecules. Loop-crevice-loop features constitute bioactive sites, where pathogenic pathways converge that are linked to AS and GP, and, potentially, diabetic nephropathy. In Pedchenko et al., we demonstrate that these sites exhibit conformational plasticity, a dynamic property underlying assembly of bioactive sites and hexamer dysfunction. The α345 hexamer structure is a platform to decipher how variants cause AS and how hypoepitopes can be triggered, causing GP. Furthermore, the bioactive sites, along with the pores and crevices on the hexamer surface, are prospective targets for therapeutic interventions.
Identifiants
pubmed: 33775698
pii: S0021-9258(21)00371-9
doi: 10.1016/j.jbc.2021.100591
pmc: PMC8093946
pii:
doi:
Substances chimiques
Collagen Type IV
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
100591Subventions
Organisme : NIDDK NIH HHS
ID : R01 DK018381
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK065138
Pays : United States
Organisme : NIDDK NIH HHS
ID : R24 DK103067
Pays : United States
Informations de copyright
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.
Déclaration de conflit d'intérêts
Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article.
Références
Methods Mol Biol. 2012;857:231-57
pubmed: 22323224
J Biol Chem. 2021 Jan-Jun;296:100592
pubmed: 33775696
Methods Cell Biol. 2018;143:171-185
pubmed: 29310777
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
J Biol Chem. 2019 May 17;294(20):7968-7981
pubmed: 30923125
IUCrJ. 2018 Oct 10;5(Pt 6):765-779
pubmed: 30443360
Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126
pubmed: 31170280
J Biol Chem. 2002 Aug 23;277(34):31142-53
pubmed: 11970952
J Comput Chem. 2005 Dec;26(16):1668-88
pubmed: 16200636
Immunology. 2017 Aug;151(4):395-404
pubmed: 28342268
Acta Crystallogr D Biol Crystallogr. 2006 Jan;62(Pt 1):72-82
pubmed: 16369096
N Engl J Med. 2003 Jun 19;348(25):2543-56
pubmed: 12815141
J Biol Chem. 2004 Oct 22;279(43):44723-30
pubmed: 15299013
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21
pubmed: 20057044
Proc Natl Acad Sci U S A. 2002 May 14;99(10):6607-12
pubmed: 12011424
N Engl J Med. 2010 Jul 22;363(4):343-54
pubmed: 20660402
Nat Rev Nephrol. 2021 Feb;17(2):112-127
pubmed: 32839582
J Biol Chem. 2002 Oct 18;277(42):40075-83
pubmed: 12193605
Hum Mutat. 2016 Jun;37(6):564-9
pubmed: 26931183
Proteomics. 2006 Apr;6 Suppl 1:S237-44
pubmed: 16534749
J Biol Chem. 1993 Dec 15;268(35):26033-6
pubmed: 8253711
J Biol Chem. 2021 Jan-Jun;296:100590
pubmed: 33774048
J Chem Theory Comput. 2013 Sep 10;9(9):3878-88
pubmed: 26592383
Nature. 2017 May 11;545(7653):243-247
pubmed: 28467828
J Biol Chem. 1999 Apr 16;274(16):11267-74
pubmed: 10196215
Kidney Int. 1999 Nov;56(5):1638-53
pubmed: 10571772
J Clin Invest. 1984 Oct;74(4):1143-55
pubmed: 6480821
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
Science. 2009 Sep 4;325(5945):1230-4
pubmed: 19729652
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):271-81
pubmed: 21460445
J Biol Chem. 1999 Sep 3;274(36):25862-8
pubmed: 10464328
Amino Acids. 2003 Dec;25(3-4):275-81
pubmed: 14661090
J Biol Chem. 2008 Aug 15;283(33):22737-48
pubmed: 18499662
Acta Crystallogr D Biol Crystallogr. 2003 Jul;59(Pt 7):1124-30
pubmed: 12832754
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
J Mol Biol. 1968 Apr 28;33(2):491-7
pubmed: 5700707