Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies.
Amino Acid Sequence
Animals
Antibodies, Monoclonal
/ chemistry
Antibodies, Neutralizing
/ chemistry
Antibodies, Viral
/ chemistry
Antibody Specificity
Binding Sites
Cryoelectron Microscopy
Ebolavirus
/ drug effects
Epitopes
/ chemistry
Female
HEK293 Cells
HeLa Cells
Hemorrhagic Fever, Ebola
/ drug therapy
Humans
Jurkat Cells
Mice
Models, Molecular
Polysaccharides
/ chemistry
Protein Binding
Protein Conformation, beta-Strand
Protein Interaction Domains and Motifs
Sequence Alignment
Sequence Homology, Amino Acid
Viral Envelope Proteins
/ antagonists & inhibitors
Ebola virus
antibody
antibody therapeutics
broadly neutralizing
ebolaviruses
filoviruses
glycan cap
mAb
Journal
Cell reports
ISSN: 2211-1247
Titre abrégé: Cell Rep
Pays: United States
ID NLM: 101573691
Informations de publication
Date de publication:
13 04 2021
13 04 2021
Historique:
received:
04
11
2020
revised:
19
02
2021
accepted:
23
03
2021
entrez:
14
4
2021
pubmed:
15
4
2021
medline:
15
2
2022
Statut:
ppublish
Résumé
Antibodies that target the glycan cap epitope on the ebolavirus glycoprotein (GP) are common in the adaptive response of survivors. A subset is known to be broadly neutralizing, but the details of their epitopes and basis for neutralization are not well understood. Here, we present cryoelectron microscopy (cryo-EM) structures of diverse glycan cap antibodies that variably synergize with GP base-binding antibodies. These structures describe a conserved site of vulnerability that anchors the mucin-like domains (MLDs) to the glycan cap, which we call the MLD anchor and cradle. Antibodies that bind to the MLD cradle share common features, including use of IGHV1-69 and IGHJ6 germline genes, which exploit hydrophobic residues and form β-hairpin structures to mimic the MLD anchor, disrupt MLD attachment, destabilize GP quaternary structure, and block cleavage events required for receptor binding. Our results provide a molecular basis for ebolavirus neutralization by broadly reactive glycan cap antibodies.
Identifiants
pubmed: 33852862
pii: S2211-1247(21)00298-9
doi: 10.1016/j.celrep.2021.108984
pmc: PMC8133395
mid: NIHMS1693704
pii:
doi:
Substances chimiques
Antibodies, Monoclonal
0
Antibodies, Neutralizing
0
Antibodies, Viral
0
Epitopes
0
Polysaccharides
0
Viral Envelope Proteins
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
108984Subventions
Organisme : NIGMS NIH HHS
ID : P41 GM103393
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI109762
Pays : United States
Organisme : NIAID NIH HHS
ID : U19 AI142785
Pays : United States
Informations de copyright
Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of interests A.L.B., E.D., and B.J.D. are employees of Integral Molecular. B.J.D. is a shareholder of Integral Molecular. J.E.C. has served as a consultant for Lilly and Luna Biologics, is a member of the Scientific Advisory Boards of CompuVax and Meissa Vaccines, and is the founder of IDBiologics. The Crowe laboratory at Vanderbilt University Medical Center has received sponsored research agreements from and IDBiologics and AstraZeneca. Vanderbilt University has applied for a patent that is related to antibodies discussed in this work. All other authors declare no competing interests.
Références
Nature. 2014 Oct 2;514(7520):47-53
pubmed: 25171469
J Biol Chem. 2012 Oct 12;287(42):34979-34991
pubmed: 22859300
Viral Immunol. 2015 Feb;28(1):3-9
pubmed: 25354393
Cell Host Microbe. 2018 Jan 10;23(1):101-109.e4
pubmed: 29324225
Sci Rep. 2019 Mar 5;9(1):3492
pubmed: 30837606
J Immunol Methods. 2008 Jul 31;336(2):142-51
pubmed: 18514220
Sci Transl Med. 2017 Apr 5;9(384):
pubmed: 28381540
Nat Microbiol. 2019 May;4(5):734-747
pubmed: 30886356
Immunity. 2018 Aug 21;49(2):363-374.e10
pubmed: 30029854
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
mBio. 2016 Feb 23;7(1):e02154-15
pubmed: 26908579
J Struct Biol. 2016 Jan;193(1):1-12
pubmed: 26592709
Nat Methods. 2017 Mar;14(3):290-296
pubmed: 28165473
Cell. 2015 Feb 26;160(5):893-903
pubmed: 25723164
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):12-21
pubmed: 20057044
J Clin Invest. 2016 Apr 1;126(4):1482-94
pubmed: 26950424
Cell Rep. 2017 Sep 19;20(12):2935-2943
pubmed: 28930686
J Struct Biol. 2009 May;166(2):205-13
pubmed: 19374019
Cell Host Microbe. 2019 Jun 12;25(6):873-883.e5
pubmed: 31194940
Cold Spring Harb Protoc. 2011 Jun 01;2011(6):716-25
pubmed: 21632777
Cell. 2019 May 30;177(6):1566-1582.e17
pubmed: 31104840
Cell Host Microbe. 2019 Jan 9;25(1):49-58.e5
pubmed: 30629918
Cell. 2017 May 18;169(5):878-890.e15
pubmed: 28525755
Methods Enzymol. 1997;276:307-26
pubmed: 27754618
Nat Methods. 2015 Oct;12(10):943-6
pubmed: 26280328
Cell. 2016 Jan 28;164(3):392-405
pubmed: 26806128
Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2567-75
pubmed: 24821781
mBio. 2018 Sep 11;9(5):
pubmed: 30206174
J Mol Biol. 1982 May 5;157(1):105-32
pubmed: 7108955
Nat Methods. 2015 Apr;12(4):361-365
pubmed: 25707030
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W503-8
pubmed: 18503082
Cell. 2015 Feb 26;160(5):904-912
pubmed: 25723165
PLoS Pathog. 2013;9(5):e1003258
pubmed: 23696729
Science. 2016 Mar 4;351(6277):1078-83
pubmed: 26912366
Cell Rep. 2016 May 17;15(7):1514-1526
pubmed: 27160900
Blood. 2001 Feb 15;97(4):1023-6
pubmed: 11159532
Mol Immunol. 2000 Oct;37(14):837-45
pubmed: 11257305
N Engl J Med. 2019 Dec 12;381(24):2293-2303
pubmed: 31774950
J Infect Dis. 2018 Nov 5;218(12):1929-1936
pubmed: 30107445
Nat Commun. 2019 Apr 17;10(1):1788
pubmed: 30996276
Science. 2000 Mar 3;287(5458):1664-6
pubmed: 10698744
Immunity. 2020 Feb 18;52(2):388-403.e12
pubmed: 32023489
J Virol. 2015 Nov;89(21):10982-92
pubmed: 26311869
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
Nature. 2012 Sep 27;489(7417):566-70
pubmed: 22932267
J Virol. 2010 Aug;84(16):8098-110
pubmed: 20538861
Nature. 2020 Aug;584(7821):443-449
pubmed: 32668443
Cold Spring Harb Protoc. 2011 Jun 01;2011(6):695-715
pubmed: 21632778
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877
pubmed: 31588918
Nat Struct Mol Biol. 2019 Mar;26(3):204-212
pubmed: 30833785
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
J Infect Dis. 2018 Nov 22;218(suppl_5):S612-S626
pubmed: 29860496
Nat Commun. 2019 Jan 10;10(1):105
pubmed: 30631063
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W252-8
pubmed: 24782522
Elife. 2018 Nov 09;7:
pubmed: 30412051
Immunology. 2014 Sep;143(1):13-20
pubmed: 24854488
Science. 2015 Jul 3;349(6243):88-91
pubmed: 26138979
Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2706-11
pubmed: 14981267
J Virol. 2015 Jan;89(1):784-98
pubmed: 25355869
J Infect Dis. 1998 Sep;178(3):651-61
pubmed: 9728532
Cell. 2018 Aug 9;174(4):938-952.e13
pubmed: 30096313
Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17182-7
pubmed: 25404321
J Chem Inf Model. 2011 Oct 24;51(10):2778-86
pubmed: 21919503
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Immunity. 2017 Apr 18;46(4):690-702
pubmed: 28423342
J Mol Biol. 2017 Feb 3;429(3):365-371
pubmed: 27964945
J Virol. 2014 Sep;88(18):10958-62
pubmed: 25008940
J Virol. 2019 Apr 3;93(8):
pubmed: 30728263
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Nat Immunol. 2018 Nov;19(11):1169-1178
pubmed: 30333617
Nature. 2016 Jul 7;535(7610):169-172
pubmed: 27362232
Future Virol. 2009;4(6):621-635
pubmed: 20198110
Cell Rep. 2018 Sep 4;24(10):2723-2732.e4
pubmed: 30184505
Clin Immunol. 2011 Nov;141(2):218-27
pubmed: 21925951
PLoS Negl Trop Dis. 2012;6(3):e1575
pubmed: 22448295
J Infect Dis. 2019 Jan 9;219(3):415-419
pubmed: 30203042
Science. 2016 Mar 18;351(6279):1343-6
pubmed: 26917592
Cell. 2017 May 18;169(5):891-904.e15
pubmed: 28525756
Nat Microbiol. 2017 Jan 30;2:16271
pubmed: 28134924
Nat Microbiol. 2018 Jun;3(6):670-677
pubmed: 29736037
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20690-4
pubmed: 22143789
Nat Microbiol. 2016 Aug 08;1(9):16128
pubmed: 27562261
Curr Opin Virol. 2019 Feb;34:149-159
pubmed: 30884330