Evaluation of structured data from electronic health records to identify clinical classification criteria attributes for systemic lupus erythematosus.
autoimmune diseases
epidemiology
systemic lupus erythematosus
Journal
Lupus science & medicine
ISSN: 2053-8790
Titre abrégé: Lupus Sci Med
Pays: England
ID NLM: 101633705
Informations de publication
Date de publication:
04 2021
04 2021
Historique:
received:
02
02
2021
revised:
12
04
2021
accepted:
13
04
2021
entrez:
27
4
2021
pubmed:
28
4
2021
medline:
18
9
2021
Statut:
ppublish
Résumé
Our objective was to develop algorithms to identify lupus clinical classification criteria attributes using structured data found in the electronic health record (EHR) and determine whether they could be used to describe a cohort of people with lupus and discriminate them from a defined healthy control cohort. We created gold standard lupus and healthy patient cohorts that were fully adjudicated for the American College of Rheumatology (ACR), Systemic Lupus International Collaborating Clinics (SLICC) and European League Against Rheumatism/ACR (EULAR/ACR) classification criteria and had matched EHR data. We implemented rule-based algorithms using structured data within the EHR system for each attribute of the three classification criteria. Individual criteria attribute and classification criteria algorithms as a whole were assessed over our combined cohorts and the overall performance of the algorithms was measured through sensitivity and specificity. Individual classification criteria attributes had a wide range of sensitivities, 7% (oral ulcers) to 97% (haematological disorders) and specificities, 56% (haematological disorders) to 98% (photosensitivity), but all could be identified in EHR data. In general, algorithms based on laboratory results performed better than those primarily based on diagnosis codes. All three classification criteria systems effectively distinguished members of our case and control cohorts, but the SLICC criteria-based algorithm had the highest overall performance (76% sensitivity, 99% specificity). It is possible to characterise disease manifestations in people with lupus using classification criteria-based algorithms that assess structured EHR data. These algorithms may reduce chart review burden and are a foundation for identifying subpopulations of patients with lupus based on disease presentation to support precision medicine applications.
Identifiants
pubmed: 33903204
pii: 8/1/e000488
doi: 10.1136/lupus-2021-000488
pmc: PMC8076919
pii:
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : NIAMS NIH HHS
ID : P30 AR072579
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG008657
Pays : United States
Informations de copyright
© Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.
Déclaration de conflit d'intérêts
Competing interests: ANK is a strategic advisor for Datavant.
Références
Lupus. 2016 Jul;25(8):805-11
pubmed: 27252256
Arthritis Care Res (Hoboken). 2013 Mar;65(3):329-39
pubmed: 23436818
Lupus. 2019 Oct;28(11):1285-1293
pubmed: 31399014
Arthritis Rheum. 2012 Aug;64(8):2677-86
pubmed: 22553077
J Am Med Inform Assoc. 2012 Jan-Feb;19(1):54-60
pubmed: 22037893
Arthritis Rheumatol. 2015 Mar;67(3):752-60
pubmed: 25590668
J Rheumatol. 2019 Jul;46(7):721-726
pubmed: 30554156
Arthritis Rheumatol. 2019 Sep;71(9):1400-1412
pubmed: 31385462
Arthritis Rheum. 1997 Sep;40(9):1725
pubmed: 9324032
Arthritis Rheum. 1982 Nov;25(11):1271-7
pubmed: 7138600
Ann Rheum Dis. 2015 Sep;74(9):1706-13
pubmed: 24834926
Ann Rheum Dis. 2019 Sep;78(9):1151-1159
pubmed: 31383717
Arthritis Care Res (Hoboken). 2018 Apr;70(4):571-581
pubmed: 28692774
Lancet. 2013 Aug 31;382(9894):809-18
pubmed: 23972423
Arthritis Rheumatol. 2019 Jan;71(1):91-98
pubmed: 30035365
Arthritis Care Res (Hoboken). 2017 May;69(5):687-693
pubmed: 27390187
J Am Med Inform Assoc. 2014 Jul-Aug;21(4):607-11
pubmed: 24821736
Lancet. 2014 Nov 22;384(9957):1878-1888
pubmed: 24881804
Semin Arthritis Rheum. 2019 Aug;49(1):84-90
pubmed: 30665626
Arthritis Care Res (Hoboken). 2017 Sep;69(9):1369-1376
pubmed: 27899012
N Engl J Med. 2010 Feb 4;362(5):382-5
pubmed: 20042745
J Biomed Inform. 2014 Oct;51:280-6
pubmed: 24960203