LC-MS/MS-based profiling of bioactive metabolites of endophytic bacteria from Cannabis sativa and their anti-Phytophthora activity.
Biocontrol agents
Cannabis sativa
Endophytic bacteria
Medicinal plants
Microbial bioactive compounds
Phytophthora parasitica
Journal
Antonie van Leeuwenhoek
ISSN: 1572-9699
Titre abrégé: Antonie Van Leeuwenhoek
Pays: Netherlands
ID NLM: 0372625
Informations de publication
Date de publication:
Aug 2021
Aug 2021
Historique:
received:
17
01
2021
accepted:
20
04
2021
pubmed:
5
5
2021
medline:
19
8
2021
entrez:
4
5
2021
Statut:
ppublish
Résumé
Protection of crop plants from phytopathogens through endophytic bacteria is a newly emerged area of biocontrol. In this study, endophytic bacteria were isolated from the rhizosphere of Cannabis sativa. Based on initial antimicrobial screening, three (03) bacteria Serratia marcescens MOSEL-w2, Enterobacter cloacae MOSEL-w7, and Paenibacillus MOSEL-w13 were selected. Antimicrobial assays of these selected bacteria against Phytophthora parasitica revealed that E. cloacae MOSEL-w7 and Paenibacillus sp. MOSEL-w13 possessed strong activity against P. parasitica. All these bacterial extracts showed strong inhibition against P. parasitica at different concentrations (4-400 µg mL
Identifiants
pubmed: 33945066
doi: 10.1007/s10482-021-01586-8
pii: 10.1007/s10482-021-01586-8
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1165-1179Subventions
Organisme : Higher Education Commision, Pakistan
ID : Irsip 32BMS65
Informations de copyright
© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.
Références
Afzal I, Iqrar I, Shinwari ZK, Yasmin A (2017) Plant growth-promoting potential of endophytic bacteria isolated from roots of wild Dodonaea viscosa L. Plant Growth Regul. https://doi.org/10.1007/s10725-016-0216-5
doi: 10.1007/s10725-016-0216-5
Afzal I, Shinwari ZK, Iqrar I (2015) Selective isolation and characterization of agriculturally beneficial endophytic bacteria from wild hemp using canola. Pak J Bot 47
Aktuganov G, Melentjev A, Galimzianova N et al (2008) Wide-range antifungal antagonism of Paenibacillus ehimensis IB-X-b and its dependence on chitinase and β-1,3-glucanase production. Can J Microbiol. https://doi.org/10.1139/W08-043
doi: 10.1139/W08-043
pubmed: 18641704
Ali GS, El-Sayed ASA, Patel JS et al (2016) Ex vivo application of secreted metabolites produced by soil-inhabiting Bacillus spp efficiently controls foliar diseases caused by Alternaria spp. Appl Environ Microbiol. https://doi.org/10.1128/AEM.02662-15
doi: 10.1128/AEM.02662-15
pubmed: 27520820
pmcid: 5068162
Ali M, Kim B, Belfield KD et al (2015) Inhibition of Phytophthora parasitica and P. capsici by silver nanoparticles synthesized using aqueous extract of Artemisia absinthium. Phytopathology. https://doi.org/10.1094/PHYTO-01-15-0006-R
doi: 10.1094/PHYTO-01-15-0006-R
pubmed: 25871856
Beatty PH, Jensen SE (2002) Paenibacillus polymyxa produces fusaricidin-type antifungal antibiotics active against Leptosphaeria maculans, the causative agent of blackleg disease of canola. Can J Microbiol. https://doi.org/10.1139/w02-002
doi: 10.1139/w02-002
pubmed: 11958569
Berg G, Köberl M, Rybakova D, et al (2017) Plant microbial diversity is suggested as the key to future biocontrol and health trends. FEMS Microbiol Ecol
Bode HB, Bethe B, Höfs R, Zeeck A (2002) Big effects from small changes: possible ways to explore nature’s chemical diversity. ChemBioChem
Brader G, Compant S, Mitter B et al (2014) Metabolic potential of endophytic bacteria. Curr Opin Biotechnol
Cortina NS, Krug D, Plaza A et al (2012) Myxoprincomide: a natural product from myxococcus xanthus discovered by comprehensive analysis of the secondary metabolome. Angew Chem Int Ed. https://doi.org/10.1002/anie.201106305
doi: 10.1002/anie.201106305
El-Sayed ASA, Akbar A, Iqrar I et al (2018) A glucanolytic Pseudomonas sp. associated with Smilax bona-nox L. displays strong activity against Phytophthora parasitica. Microbiol Res. https://doi.org/10.1016/j.micres.2017.11.018
doi: 10.1016/j.micres.2017.11.018
pubmed: 29458848
El-Sayed ASA, Ali GS (2020) Aspergillus flavipes is a novel efficient biocontrol agent of Phytophthora parasitica. Biol Control. https://doi.org/10.1016/j.biocontrol.2019.104072
doi: 10.1016/j.biocontrol.2019.104072
Fai PB, Grant A (2009) A rapid resazurin bioassay for assessing the toxicity of fungicides. Chemosphere. https://doi.org/10.1016/j.chemosphere.2008.11.078
doi: 10.1016/j.chemosphere.2008.11.078
pubmed: 19185901
Grond S, Papastavrou I, Zeeck A (2002) Novel α-L-rhamnopyranosides from a single strain of Streptomyces by supplement-induced biosynthetic steps. Eur J Org Chem. https://doi.org/10.1002/1099-0690(200210)2002:19%3c3237::AID-EJOC3237%3e3.0.CO;2-T
doi: 10.1002/1099-0690(200210)2002:19<3237::AID-EJOC3237>3.0.CO;2-T
Grover M, Ali SZ, Sandhya V et al (2011) Role of microorganisms in adaptation of agriculture crops to abiotic stresses. World J Microbiol Biotechnol. https://doi.org/10.1007/s11274-010-0572-7
doi: 10.1007/s11274-010-0572-7
Haas BJ, Kamoun S, Zody MC et al (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. https://doi.org/10.1038/nature08358
doi: 10.1038/nature08358
pubmed: 19741609
pmcid: 2756445
Hudzicki J (2009) Kirby-Bauer disk diffusion susceptibility test protocol. Kirby-Bauer-Disk-Diffusion-Susceptibility-Test-Protocol
Hur M, Campbell AA, Almeida-De-Macedo M, et al (2013) A global approach to analysis and interpretation of metabolic data for plant natural product discovery. Nat Prod Rep
Hussein HAA, Mekki BB, El-Sadek MEA, El Lateef EE (2019) Effect of L-Ornithine application on improving drought tolerance in sugar beet plants. Heliyon. https://doi.org/10.1016/j.heliyon.2019.e02631
doi: 10.1016/j.heliyon.2019.e02631
pubmed: 31667428
pmcid: 6812460
Igamberdiev AU, Kleczkowski LA (2018) The glycerate and phosphorylated pathways of serine synthesis in plants: the branches of plant glycolysis linking carbon and nitrogen metabolism. Front Plant Sci
Ishihara A, Hashimoto Y, Tanaka C et al (2008) The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production. Plant J. https://doi.org/10.1111/j.1365-313X.2008.03441.x
doi: 10.1111/j.1365-313X.2008.03441.x
pubmed: 18266919
Iqrar I, Shinwari ZK, El-Sayed ASAF, Ali GS (2021) Exploration of microbiome of medicinally important plants as biocontrol agents against Phytophthora parasitica. Arch Microbiol. https://doi.org/10.1007/s00203-021-02237-2
doi: 10.1007/s00203-021-02237-2
pubmed: 33675371
Kang Z, Babar MA, Khan N et al (2019) Comparative metabolomic profiling in the roots and leaves in contrasting genotypes reveals complex mechanisms involved in post-anthesis drought tolerance in wheat. PLoS ONE. https://doi.org/10.1371/journal.pone.0213502
doi: 10.1371/journal.pone.0213502
pubmed: 31887219
pmcid: 6936802
Kilani J, Fillinger S (2016) Phenylpyrroles: 30 years, two molecules and (nearly) no resistance. Front Microbiol
Kim WJ, Kim YO, Kim JH et al (2016) Liquid chromatography-mass spectrometry-based rapid secondary-metabolite profiling of marine pseudoalteromonas sp. M2. Mar Drugs. https://doi.org/10.3390/md14010024
doi: 10.3390/md14010024
pubmed: 27983632
pmcid: 5192464
Kjer J, Debbab A, Aly AH, Proksch P (2010) Methods for isolation of marine-derived endophytic fungi and their bioactive secondary products. Nat Prot 5(3):479–490
doi: 10.1038/nprot.2009.233
Köhl J, Kolnaar R, Ravensberg WJ (2019) Mode of action of microbial biological control agents against plant diseases: relevance beyond efficacy. Front Plant Sci
Krug D, Zurek G, Revermann O et al (2008a) Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity. Appl Environ Microbiol. https://doi.org/10.1128/AEM.02863-07
doi: 10.1128/AEM.02863-07
pubmed: 18378661
pmcid: 2394937
Krug D, Zurek G, Schneider B et al (2008b) Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography-electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis. Anal Chim Acta. https://doi.org/10.1016/j.aca.2008.06.036
doi: 10.1016/j.aca.2008.06.036
pubmed: 18706314
Liu CJ, Wang HR, Wang L et al (2018) Effects of different types of polyamine on growth, physiological and biochemical nature of lettuce under drought stress. In: IOP conference series: earth and environmental science
Martin-Tanguy J (2001) Metabolism and function of polyamines in plants: recent development (new approaches). Plant Growth Regul. https://doi.org/10.1023/A:1013343106574
doi: 10.1023/A:1013343106574
Mazid M, Khan TA, Mohammad F (2011) Role of secondary metabolites in defense mechanisms of plants. Biol Med
Mei C, Flinn B (2009) The use of beneficial microbial endophytes for plant biomass and stress tolerance improvement. Recent Pat Biotechnol. https://doi.org/10.2174/187220810790069523
doi: 10.2174/187220810790069523
Meng Y, Zhang Q, Ding W, Shan W (2014) Phytophthora parasitica: a model oomycete plant pathogen. Mycology
Navarro MOP, Piva ACM, Simionato AS et al (2019) Bioactive compounds produced by biocontrol agents driving plant health. In: Microbiome in plant health and disease
Patel JS, Vitoreli A, Palmateer AJ et al (2016) Characterization of Phytophthora spp. Isolated from ornamental plants in Florida. Plant Dis. https://doi.org/10.1094/PDIS-05-15-0598-RE
doi: 10.1094/PDIS-05-15-0598-RE
pubmed: 30694125
Pimentel MR, Molina G, Dionísio AP et al (2011) The use of endophytes to obtain bioactive compounds and their application in biotransformation process. Biotechnol Res Int. https://doi.org/10.4061/2011/576286
doi: 10.4061/2011/576286
pubmed: 21350663
Raaijmakers JM, Mazzola M (2012) Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria. Annu Rev Phytopathol
Rodrigues B, Morais TP, Zaini PA et al (2020) Antimicrobial activity of Epsilon-Poly-l-lysine against phytopathogenic bacteria. Sci Rep. https://doi.org/10.1038/s41598-020-68262-1
doi: 10.1038/s41598-020-68262-1
pubmed: 33168858
pmcid: 7653907
Rutledge PJ, Challis GL (2015) Discovery of microbial natural products by activation of silent biosynthetic gene clusters. Nat Rev Microbiol
Savary S, Bregaglio S, Willocquet L et al (2017) Crop health and its global impacts on the components of food security. Food Secur. https://doi.org/10.1007/s12571-017-0659-1
doi: 10.1007/s12571-017-0659-1
Sharma M, Tarafdar A, Ghosh R, Gopalakrishanan S (2017) Biological control as a tool for eco-friendly management of plant pathogens
Shinwari ZK, Tanveer F, Iqrar I (2019) Role of microbes in plant health, disease management, and abiotic stress management. In: Microbiome in plant health and disease. Springer Singapore, pp 231–250
Soares AR, Marchiosi R, de Cássia Siqueira-Soares R, et al (2014) The role of L-DOPA in plants. Plant Signal Behav
Thirumurugan D, Cholarajan A, Raja SS, Vijayakumar R (2018). An introductory chapter: secondary metabolites. Second metab—sources Appl 1–21
Venkateshwaran M, Jayaraman D, Chabaud M et al (2015) A role for the mevalonate pathway in early plant symbiotic signaling. Proc Natl Acad Sci USA. https://doi.org/10.1073/pnas.1413762112
doi: 10.1073/pnas.1413762112
pubmed: 26199419
pmcid: 4534228
Wang Y, Meng Y, Zhang M et al (2011) Infection of Arabidopsis thaliana by Phytophthora parasitica and identification of variation in host specificity. Mol Plant Pathol. https://doi.org/10.1111/j.1364-3703.2010.00659.x
doi: 10.1111/j.1364-3703.2010.00659.x
pubmed: 21726400
pmcid: 6638858
Wiegand I, Hilpert K, Hancock REW (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc. https://doi.org/10.1038/nprot.2007.521
doi: 10.1038/nprot.2007.521
pubmed: 18274517
Xu Z, Shao J, Li B et al (2013) Contribution of bacillomycin D in Bacillus amyloliquefaciens SQR9 to antifungal activity and biofilm formation. Appl Environ Microbiol. https://doi.org/10.1128/AEM.02645-12
doi: 10.1128/AEM.02645-12
pubmed: 24375145
pmcid: 3837794
Zeier J (2013) New insights into the regulation of plant immunity by amino acid metabolic pathways. Plant Cell Environ