Structural insights on ligand recognition at the human leukotriene B4 receptor 1.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
20 05 2021
Historique:
received: 10 07 2020
accepted: 16 04 2021
entrez: 21 5 2021
pubmed: 22 5 2021
medline: 2 6 2021
Statut: epublish

Résumé

The leukotriene B4 receptor 1 (BLT1) regulates the recruitment and chemotaxis of different cell types and plays a role in the pathophysiology of infectious, allergic, metabolic, and tumorigenic human diseases. Here we present a crystal structure of human BLT1 (hBLT1) in complex with a selective antagonist MK-D-046, developed for the treatment of type 2 diabetes and other inflammatory conditions. Comprehensive analysis of the structure and structure-activity relationship data, reinforced by site-directed mutagenesis and docking studies, reveals molecular determinants of ligand binding and selectivity toward different BLT receptor subtypes and across species. The structure helps to identify a putative membrane-buried ligand access channel as well as potential receptor binding modes of endogenous agonists. These structural insights of hBLT1 enrich our understanding of its ligand recognition and open up future avenues in structure-based drug design.

Identifiants

pubmed: 34016973
doi: 10.1038/s41467-021-23149-1
pii: 10.1038/s41467-021-23149-1
pmc: PMC8137929
doi:

Substances chimiques

Hypoglycemic Agents 0
LTB4R protein, human 0
Ligands 0
Receptors, Leukotriene B4 0
Recombinant Proteins 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

2971

Subventions

Organisme : NIGMS NIH HHS
ID : R35 GM127086
Pays : United States
Organisme : NIH HHS
ID : S10 OD012289
Pays : United States

Références

Elife. 2018 Jun 21;7:
pubmed: 29927385
J Immunol. 2011 Aug 15;187(4):1942-9
pubmed: 21742977
Nat Protoc. 2009;4(5):706-31
pubmed: 19390528
Methods Enzymol. 1997;276:307-26
pubmed: 27754618
Trends Pharmacol Sci. 2009 May;30(5):249-59
pubmed: 19375807
Nucleic Acids Res. 2018 Jan 4;46(D1):D440-D446
pubmed: 29155946
Science. 2013 May 3;340(6132):615-9
pubmed: 23519215
ACS Med Chem Lett. 2020 Jul 14;11(8):1529-1534
pubmed: 32832019
Nature. 1996 Nov 7;384(6604):39-43
pubmed: 8900274
J Biol Chem. 2007 Mar 30;282(13):10005-10017
pubmed: 17237498
Nat Chem Biol. 2018 Mar;14(3):262-269
pubmed: 29309055
Sci Signal. 2018 Aug 21;11(544):
pubmed: 30131369
Am J Respir Crit Care Med. 2012 Nov 15;186(10):989-98
pubmed: 22955313
Proteins. 1997;Suppl 1:215-20
pubmed: 9485515
FASEB J. 2013 Aug;27(8):3306-14
pubmed: 23603839
Am J Med. 2017 Jun;130(6S):S4-S17
pubmed: 28526182
Biochemistry. 2006 May 9;45(18):5733-44
pubmed: 16669617
J Immunol. 2013 Sep 15;191(6):3462-70
pubmed: 23960231
Semin Immunol. 2017 Oct;33:30-36
pubmed: 29042026
J Mol Biol. 2003 Jun 13;329(4):801-14
pubmed: 12787679
J Clin Oncol. 2005 Aug 10;23(23):5365-73
pubmed: 15939925
J Biol Chem. 2007 Feb 9;282(6):3998-4006
pubmed: 17158791
J Biol Chem. 2001 Apr 13;276(15):12454-9
pubmed: 11278893
J Biol Chem. 2003 Jul 4;278(27):24552-62
pubmed: 12721292
Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1074-80
pubmed: 19770504
Curr Opin Struct Biol. 1995 Apr;5(2):205-10
pubmed: 7648322
Eur J Pharmacol. 1999 Sep 10;380(2-3):203-13
pubmed: 10513580
J Immunol. 2005 Apr 15;174(8):4979-84
pubmed: 15814727
BMJ. 2018 Sep 4;362:k1497
pubmed: 30181166
Semin Immunol. 2017 Oct;33:65-73
pubmed: 29042030
J Am Chem Soc. 2010 Jul 7;132(26):9049-57
pubmed: 20552979
J Pharmacol Exp Ther. 2001 Apr;297(1):458-66
pubmed: 11259574
Science. 2012 Feb 17;335(6070):851-5
pubmed: 22344443
Expert Opin Investig Drugs. 2007 Dec;16(12):1909-20
pubmed: 18042000
J Biol Chem. 2017 Apr 14;292(15):6123-6134
pubmed: 28242764
Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17501-6
pubmed: 16293697
J Mol Biol. 2008 Mar 7;376(5):1305-19
pubmed: 18222471
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Nature. 2019 May;569(7755):284-288
pubmed: 31019306
Circulation. 2005 Jul 26;112(4):578-86
pubmed: 16043658
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21
pubmed: 20124702
Semin Immunol. 2017 Oct;33:58-64
pubmed: 28982616
Am J Physiol Lung Cell Mol Physiol. 2006 Jan;290(1):L170-8
pubmed: 16126787
J Pharmacol Exp Ther. 2006 Feb;316(2):955-65
pubmed: 16207832
J Exp Med. 2006 Apr 17;203(4):829-35
pubmed: 16567386
Nucleic Acids Res. 2012 Jan;40(Database issue):D370-6
pubmed: 21890895
Sci Adv. 2019 Oct 09;5(10):eaax2518
pubmed: 31633023
Nat Med. 2015 Mar;21(3):239-247
pubmed: 25706874
Biochem J. 1998 Oct 1;335 ( Pt 1):15-8
pubmed: 9742207
Trends Biochem Sci. 2014 May;39(5):233-44
pubmed: 24767681
Nat Microbiol. 2019 Aug;4(8):1389-1400
pubmed: 31110361
J Exp Med. 2008 Apr 14;205(4):759-66
pubmed: 18378794
J Exp Med. 2000 Aug 7;192(3):421-32
pubmed: 10934230
Bio Protoc. 2020 Aug 20;10(16):e3715
pubmed: 33659379
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Annu Rev Pharmacol Toxicol. 2013;53:531-56
pubmed: 23140243
Nat Commun. 2019 Dec 6;10(1):5573
pubmed: 31811124
Acta Crystallogr D Biol Crystallogr. 2001 Apr;57(Pt 4):527-35
pubmed: 11264581
J Biol Chem. 2000 Dec 29;275(52):40686-94
pubmed: 11006272
Nature. 1997 Jun 5;387(6633):620-4
pubmed: 9177352

Auteurs

Nairie Michaelian (N)

Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA.
Department of Chemistry, University of Southern California, Los Angeles, CA, USA.

Anastasiia Sadybekov (A)

Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA.
Department of Chemistry, University of Southern California, Los Angeles, CA, USA.

Élie Besserer-Offroy (É)

Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, Sherbrooke, QC, Canada.
Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, CA, USA.

Gye Won Han (GW)

Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA.
Department of Chemistry, University of Southern California, Los Angeles, CA, USA.

Harini Krishnamurthy (H)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Beata A Zamlynny (BA)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Xavier Fradera (X)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Phieng Siliphaivanh (P)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Jeremy Presland (J)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Kerrie B Spencer (KB)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Stephen M Soisson (SM)

Merck Research Laboratories, Merck & Co., Inc., Kenilworth, NJ, USA.

Petr Popov (P)

Center for Computational and Data Intensive Science and Engineering, Skolkovo Institute of Science and Technology, Moscow, Russia.
Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia.

Philippe Sarret (P)

Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Institut de Pharmacologie de Sherbrooke, Université de Sherbrooke, Sherbrooke, QC, Canada.

Vsevolod Katritch (V)

Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA.
Department of Chemistry, University of Southern California, Los Angeles, CA, USA.
Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.

Vadim Cherezov (V)

Bridge Institute, USC Michelson Center for Convergent Bioscience, University of Southern California, Los Angeles, CA, USA. cherezov@usc.edu.
Department of Chemistry, University of Southern California, Los Angeles, CA, USA. cherezov@usc.edu.
Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia. cherezov@usc.edu.

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Classifications MeSH