Cytidine deaminase can deaminate fused pyrimidine ribonucleosides.


Journal

Organic & biomolecular chemistry
ISSN: 1477-0539
Titre abrégé: Org Biomol Chem
Pays: England
ID NLM: 101154995

Informations de publication

Date de publication:
21 07 2021
Historique:
pubmed: 22 5 2021
medline: 11 3 2022
entrez: 21 5 2021
Statut: ppublish

Résumé

The tolerance of cytidine deaminase (CDA) to expanded heterocycles is explored via three fluorescent cytidine analogues, where the pyrimidine core is fused to three distinct five-membered heterocycles at the 5/6 positions. The reaction between CDA and each analogue is followed by absorption and emission spectroscopy, revealing shorter reaction times for all analogues than the native substrate. Pseudo-first order and Michaelis-Menten kinetic analyses provide insight into the enzymatic deamination reactions and assist in drawing comparison to established structure activity relationships. Finally, inhibitor screening modalities are created for each analogue and validated with zebularine and tetrahydrouridine, two known CDA inhibitors.

Identifiants

pubmed: 34019616
doi: 10.1039/d1ob00705j
pmc: PMC8295196
mid: NIHMS1709076
doi:

Substances chimiques

Cytidine Deaminase EC 3.5.4.5

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

6237-6243

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM069773
Pays : United States

Références

Drug Metab Dispos. 2020 Mar;48(3):153-158
pubmed: 31871136
J Med Chem. 2005 Feb 10;48(3):658-60
pubmed: 15689149
PLoS One. 2012;7(5):e37424
pubmed: 22616006
Blood. 2012 Feb 2;119(5):1240-7
pubmed: 22160381
Protein Eng. 1998 Jan;11(1):59-63
pubmed: 9579661
J Am Chem Soc. 2015 Nov 25;137(46):14602-5
pubmed: 26523462
Chem Sci. 2017 Apr 1;8(4):2983-2993
pubmed: 28451365
J Biol Chem. 1984 Nov 10;259(21):13621-7
pubmed: 6386818
Biosystems. 2004 Jul;75(1-3):43-55
pubmed: 15245803
FEBS Open Bio. 2015 Aug 03;5:634-9
pubmed: 26322268
FEBS J. 2009 Feb;276(4):886-902
pubmed: 19215296
J Med Chem. 1980 Jul;23(7):713-5
pubmed: 7401098
Chembiochem. 2019 Mar 1;20(5):718-726
pubmed: 30566279
Chem Rev. 2010 May 12;110(5):2579-619
pubmed: 20205430
J Am Chem Soc. 2011 Sep 28;133(38):14912-5
pubmed: 21866967
Biomed Chromatogr. 1991 Nov;5(6):235-9
pubmed: 1760590
Cancer Chemother Pharmacol. 1992;30(1):7-11
pubmed: 1375134
Nucleosides Nucleotides Nucleic Acids. 2005;24(5-7):305-18
pubmed: 16247946
Biochemistry. 1975 Nov 18;14(23):5099-105
pubmed: 53069
Biochemistry. 1989 Nov 28;28(24):9423-30
pubmed: 2692708
J Am Chem Soc. 2017 Nov 8;139(44):15556-15559
pubmed: 29043790
Biochem Pharmacol. 1973 Nov 1;22(21):2763-5
pubmed: 4128550
Biochem Pharmacol. 1980 Mar 1;29(5):830-2
pubmed: 20227965
J Med Chem. 1986 Aug;29(8):1374-80
pubmed: 3735306
Angew Chem Int Ed Engl. 2013 Dec 23;52(52):14026-30
pubmed: 24288262
J Chromatogr B Analyt Technol Biomed Life Sci. 2009 Jul 15;877(22):2123-9
pubmed: 19546035
Mol Ther. 2020 Feb 5;28(2):357-366
pubmed: 31870623
Angew Chem Int Ed Engl. 2018 Jan 22;57(4):1087-1090
pubmed: 29228460
Biochemistry. 2006 Jun 27;45(25):7825-33
pubmed: 16784234
Chemistry. 2020 May 12;26(27):6076-6084
pubmed: 32157755
Prenat Diagn. 1994 Mar;14(3):213-8
pubmed: 8052571
Int J Biol Macromol. 2014 Feb;63:64-74
pubmed: 24183806

Auteurs

Paul T Ludford (PT)

Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA. ytor@ucsd.edu.

Yao Li (Y)

Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA. ytor@ucsd.edu.

Shenghua Yang (S)

Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA. ytor@ucsd.edu.

Yitzhak Tor (Y)

Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0358, USA. ytor@ucsd.edu.

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Classifications MeSH