Novel irreversible covalent BTK inhibitors discovered using DNA-encoded chemistry.


Journal

Bioorganic & medicinal chemistry
ISSN: 1464-3391
Titre abrégé: Bioorg Med Chem
Pays: England
ID NLM: 9413298

Informations de publication

Date de publication:
15 07 2021
Historique:
received: 28 02 2021
revised: 11 05 2021
accepted: 13 05 2021
pubmed: 7 6 2021
medline: 16 12 2021
entrez: 6 6 2021
Statut: ppublish

Résumé

Libraries of DNA-Encoded small molecules created using combinatorial chemistry and synthetic oligonucleotides are being applied to drug discovery projects across the pharmaceutical industry. The majority of reported projects describe the discovery of reversible, i.e. non-covalent, target modulators. We synthesized multiple DNA-encoded chemical libraries terminated in electrophiles and then used them to discover covalent irreversible inhibitors and report the successful discovery of acrylamide- and epoxide-terminated Bruton's Tyrosine Kinase (BTK) inhibitors. We also demonstrate their selectivity, potency and covalent cysteine engagement using a range of techniques including X-ray crystallography, thermal transition shift assay, reporter displacement assay and intact protein complex mass spectrometry. The epoxide BTK inhibitors described here are the first ever reported to utilize this electrophile for this target.

Identifiants

pubmed: 34091303
pii: S0968-0896(21)00231-5
doi: 10.1016/j.bmc.2021.116223
pii:
doi:

Substances chimiques

Protein Kinase Inhibitors 0
Small Molecule Libraries 0
DNA 9007-49-2
Agammaglobulinaemia Tyrosine Kinase EC 2.7.10.2

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

116223

Informations de copyright

Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Auteurs

John P Guilinger (JP)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA. Electronic address: jguilinger@x-chemrx.com.

Archna Archna (A)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Martin Augustin (M)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Andreas Bergmann (A)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Paolo A Centrella (PA)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA.

Matthew A Clark (MA)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA.

John W Cuozzo (JW)

ZebiAI Inc., 100 Beaver Street, Waltham, MA 02453, USA.

Maike Däther (M)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Marie-Aude Guié (MA)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA.

Sevan Habeshian (S)

Laboratory of Therapeutic Proteins and Peptides École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

Reiner Kiefersauer (R)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Stephan Krapp (S)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Alfred Lammens (A)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Lukas Lercher (L)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Julie Liu (J)

Accent Therapeutics Inc., 65 Hayden Avenue, Lexington, MA 02421, USA.

Yanbin Liu (Y)

Cyteir Therapeutics, 128 Spring St, Lexington, MA 02421, USA.

Klaus Maskos (K)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Michael Mrosek (M)

Bruker AXS GmbH, Karlsruhe, Germany.

Klaus Pflügler (K)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Markus Siegert (M)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany.

Xia Tian (X)

Nurix Therapeutics Inc., 1700 Owens Street, Suite 205 San Francisco, CA 94158, USA.

Ying Zhang (Y)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA.

Debora L Konz Makino (DL)

Proteros biostructures GmbH, Bunsenstr. 7a, 82152 Planegg-Martinsried, Germany. Electronic address: konz-makino@proteros.de.

Anthony D Keefe (AD)

X-Chem Inc., 100 Beaver Street, Waltham, MA 02453, USA. Electronic address: akeefe@x-chemrx.com.

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Classifications MeSH