Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals.


Journal

Gut
ISSN: 1468-3288
Titre abrégé: Gut
Pays: England
ID NLM: 2985108R

Informations de publication

Date de publication:
07 2022
Historique:
received: 16 05 2021
accepted: 15 07 2021
pubmed: 29 7 2021
medline: 10 6 2022
entrez: 28 7 2021
Statut: ppublish

Résumé

MicroRNA (miRNA) profiles have been evaluated in several biospecimens in relation to common diseases for which diet may have a considerable impact. We aimed at characterising how specific diets are associated with the miRNome in stool of vegans, vegetarians and omnivores and how this is reflected in the gut microbial composition, as this is still poorly explored. We performed small RNA and shotgun metagenomic sequencing in faecal samples and dietary recording from 120 healthy volunteers, equally distributed for the different diets and matched for sex and age. We found 49 miRNAs differentially expressed among vegans, vegetarians and omnivores (adj. p <0.05) and confirmed trends of expression levels of such miRNAs in vegans and vegetarians compared with an independent cohort of 45 omnivores. Two miRNAs related to lipid metabolism, miR-636 and miR-4739, were inversely correlated to the non-omnivorous diet duration, independently of subject age. Seventeen miRNAs correlated (|rho|>0.22, adj. p <0.05) with the estimated intake of nutrients, particularly animal proteins, phosphorus and, interestingly, lipids. In omnivores, higher Stool miRNA profiles are associated with specific diets and support the role of lipids as a driver of epigenetic changes and host-microbial molecular interactions in the gut.

Identifiants

pubmed: 34315772
pii: gutjnl-2021-325168
doi: 10.1136/gutjnl-2021-325168
pmc: PMC9185830
doi:

Substances chimiques

Lipids 0
MicroRNAs 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1302-1314

Commentaires et corrections

Type : CommentIn
Type : CommentIn

Informations de copyright

© Author(s) (or their employer(s)) 2022. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.

Déclaration de conflit d'intérêts

Competing interests: None declared.

Références

Nat Med. 2019 Apr;25(4):667-678
pubmed: 30936548
Mutagenesis. 2020 Jul 11;35(3):243-260
pubmed: 31784760
Nucleic Acids Res. 2016 May 5;44(8):3865-77
pubmed: 26921406
J Alzheimers Dis Parkinsonism. 2018;8(1):
pubmed: 29862137
iScience. 2020 Nov 30;23(12):101878
pubmed: 33344921
Curr Opin Pharmacol. 2017 Dec;37:142-150
pubmed: 29154194
Cell Metab. 2017 Jan 10;25(1):27-42
pubmed: 27641100
Bioinformatics. 2009 Jul 15;25(14):1754-60
pubmed: 19451168
Nucleic Acids Res. 2019 Jan 8;47(D1):D155-D162
pubmed: 30423142
Biochem J. 2020 Jul 31;477(14):2735-2754
pubmed: 32648926
Sci Rep. 2020 Nov 3;10(1):18921
pubmed: 33144601
Cancers (Basel). 2020 Jun 09;12(6):
pubmed: 32527011
PLoS One. 2018 Aug 8;13(8):e0201217
pubmed: 30089130
Mol Nutr Food Res. 2017 Nov;61(11):
pubmed: 28752563
Front Pharmacol. 2021 Jan 14;11:619200
pubmed: 33519486
Stem Cell Res. 2017 Apr;20:94-104
pubmed: 28340487
Inflamm Bowel Dis. 2009 Aug;15(8):1183-9
pubmed: 19235886
Clin Chim Acta. 2017 Nov;474:60-66
pubmed: 28882489
Front Nutr. 2019 Apr 17;6:47
pubmed: 31058160
Int J Food Sci Nutr. 2015 Jul;66 Suppl 1:S22-30
pubmed: 26241008
Gut. 2016 Jan;65(1):63-72
pubmed: 25431456
Gene. 2015 Apr 15;560(2):140-2
pubmed: 25637573
Genome Biol. 2014;15(12):550
pubmed: 25516281
Bioinformatics. 2019 Sep 1;35(17):3055-3062
pubmed: 30657866
Gut. 2020 Jul;69(7):1258-1268
pubmed: 32075887
Am J Clin Nutr. 2009 May;89(5):1627S-1633S
pubmed: 19279075
BMC Bioinformatics. 2010 Sep 27;11:485
pubmed: 20875133
Oncotarget. 2017 Dec 14;9(3):3097-3111
pubmed: 29423032
Cell. 2014 May 22;157(5):1104-16
pubmed: 24855947
Trends Microbiol. 2021 Aug;29(8):713-724
pubmed: 33419590
Nutr Metab (Lond). 2018 Oct 1;15:68
pubmed: 30302122
Eur Rev Med Pharmacol Sci. 2019 Sep;23(18):8075-8083
pubmed: 31599433
Genes (Basel). 2020 Sep 12;11(9):
pubmed: 32932716
Am J Clin Nutr. 2020 Sep 1;112(3):603-612
pubmed: 32619213
Proc Nutr Soc. 2016 Aug;75(3):287-93
pubmed: 26707634
Mol Cell. 2016 Dec 1;64(5):982-992
pubmed: 27889451
Gut. 2016 Nov;65(11):1812-1821
pubmed: 26416813
Clin Nutr. 2020 Mar;39(3):910-916
pubmed: 31003790
Lipids Health Dis. 2019 Oct 15;18(1):178
pubmed: 31615571
J Nutr Biochem. 2018 Jul;57:45-55
pubmed: 29674246
Nutrients. 2016 Sep 26;8(10):
pubmed: 27681738
PeerJ. 2018 Jan 12;6:e4262
pubmed: 29340253
Eur J Cancer Prev. 2019 Jul;28(4):287-293
pubmed: 30640205
Biochim Biophys Acta Mol Cell Biol Lipids. 2019 May;1864(5):744-755
pubmed: 30822529
Nat Rev Genet. 2020 Dec;21(12):737-753
pubmed: 32908249
mSystems. 2019 Sep 17;4(5):
pubmed: 31530647
Nature. 2015 Feb 19;518(7539):317-30
pubmed: 25693563
Cancers (Basel). 2020 Mar 17;12(3):
pubmed: 32192092
Science. 2011 Oct 7;334(6052):105-8
pubmed: 21885731
Mutagenesis. 2014 Sep;29(5):385-91
pubmed: 25150024
Nat Methods. 2016 May;13(5):435-8
pubmed: 26999001
Public Health Nutr. 2002 Dec;5(6B):1113-24
pubmed: 12639222
J Nutrigenet Nutrigenomics. 2013;6(1):16-31
pubmed: 23445777
Signal Transduct Target Ther. 2016 Jan 28;1:15004
pubmed: 29263891
J Biol Chem. 2004 Dec 10;279(50):52361-5
pubmed: 15504739
Cell Metab. 2021 May 4;33(5):857-872
pubmed: 33951472
Crit Rev Food Sci Nutr. 2017 Nov 22;57(17):3640-3649
pubmed: 26853923
JAMA Ophthalmol. 2019 May 1;137(5):537-542
pubmed: 30869769
Nutrients. 2019 Jun 13;11(6):
pubmed: 31200481
Front Genet. 2020 Jul 10;11:707
pubmed: 32742270
Nat Methods. 2015 Oct;12(10):902-3
pubmed: 26418763
Cell Host Microbe. 2016 Jan 13;19(1):32-43
pubmed: 26764595
Nature. 2007 Oct 18;449(7164):804-10
pubmed: 17943116
Cardiovasc Res. 2021 Apr 23;117(5):1339-1357
pubmed: 32683448
Mol Ther Oncolytics. 2020 Apr 14;17:320-331
pubmed: 32382656
Cardiol Res Pract. 2020 Feb 14;2020:1481937
pubmed: 32148949
Cell Death Dis. 2016 Dec 15;7(12):e2521
pubmed: 27977009
Nutrients. 2019 Nov 21;11(12):
pubmed: 31766503
Sci Transl Med. 2019 Jun 12;11(496):
pubmed: 31189717
Nat Methods. 2018 Nov;15(11):962-968
pubmed: 30377376
Front Mol Biosci. 2020 Aug 07;7:181
pubmed: 32850969
Evid Based Complement Alternat Med. 2019 Mar 07;2019:3513179
pubmed: 30984273
Nucleic Acids Res. 2014 Jul;42(12):7528-38
pubmed: 24875473
Pediatr Obes. 2016 Jun;11(3):228-34
pubmed: 26223376
Cell Host Microbe. 2019 Dec 11;26(6):779-794.e8
pubmed: 31784260
Pharmacol Res. 2021 Jan;163:105243
pubmed: 33080322
Gastroenterology. 2013 Oct;145(4):842-52.e2
pubmed: 23856509
Transl Psychiatry. 2019 Sep 12;9(1):226
pubmed: 31515473
Genome Biol. 2019 Oct 8;20(1):202
pubmed: 31594544
J Cell Physiol. 2019 Jul;234(7):11200-11207
pubmed: 30515796
Annu Rev Public Health. 2014;35:83-103
pubmed: 24641555
Sci Rep. 2020 Mar 6;10(1):4247
pubmed: 32144387
Curr Biol. 2013 May 6;23(9):R359-62
pubmed: 23802281
Eur J Endocrinol. 2015 Mar;172(3):291-300
pubmed: 25515554

Auteurs

Sonia Tarallo (S)

Italian Institute for Genomic Medicine (IIGM), c/o IRCCS Candiolo, Torino, Italy.
Candiolo Cancer Institute - FPO IRCCS, Candiolo, Torino, Italy.

Giulio Ferrero (G)

Department of Computer Science, University of Torino, Torino, Italy.
Department of Clinical and Biological Sciences, University of Torino, Torino, Italy.

Francesca De Filippis (F)

Department Agricultural Sciences, University of Naples Federico II, Portici, Napoli, Italy.
Task Force on Microbiome Studies, University of Naples Federico II, Napoli, Italy.

Antonio Francavilla (A)

Italian Institute for Genomic Medicine (IIGM), c/o IRCCS Candiolo, Torino, Italy.
Candiolo Cancer Institute - FPO IRCCS, Candiolo, Torino, Italy.

Edoardo Pasolli (E)

Department Agricultural Sciences, University of Naples Federico II, Portici, Napoli, Italy.
Task Force on Microbiome Studies, University of Naples Federico II, Napoli, Italy.

Valentina Panero (V)

Italian Institute for Genomic Medicine (IIGM), c/o IRCCS Candiolo, Torino, Italy.

Francesca Cordero (F)

Department of Computer Science, University of Torino, Torino, Italy.

Nicola Segata (N)

Centre for Integrative Biology, University of Trento, Trento, Italy.

Sara Grioni (S)

Epidemiology and Prevention Unit, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano, Italy.

Ruggero Gaetano Pensa (RG)

Department of Computer Science, University of Torino, Torino, Italy.

Barbara Pardini (B)

Italian Institute for Genomic Medicine (IIGM), c/o IRCCS Candiolo, Torino, Italy.
Candiolo Cancer Institute - FPO IRCCS, Candiolo, Torino, Italy.

Danilo Ercolini (D)

Department Agricultural Sciences, University of Naples Federico II, Portici, Napoli, Italy alessio.naccarati@iigm.it ercolini@unina.it.
Task Force on Microbiome Studies, University of Naples Federico II, Napoli, Italy.

Alessio Naccarati (A)

Italian Institute for Genomic Medicine (IIGM), c/o IRCCS Candiolo, Torino, Italy alessio.naccarati@iigm.it ercolini@unina.it.
Candiolo Cancer Institute - FPO IRCCS, Candiolo, Torino, Italy.

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