Role of FAM134 paralogues in endoplasmic reticulum remodeling, ER-phagy, and Collagen quality control.


Journal

EMBO reports
ISSN: 1469-3178
Titre abrégé: EMBO Rep
Pays: England
ID NLM: 100963049

Informations de publication

Date de publication:
06 09 2021
Historique:
revised: 07 07 2021
received: 16 12 2020
accepted: 08 07 2021
pubmed: 3 8 2021
medline: 25 2 2023
entrez: 2 8 2021
Statut: ppublish

Résumé

Degradation of the endoplasmic reticulum (ER) via selective autophagy (ER-phagy) is vital for cellular homeostasis. We identify FAM134A/RETREG2 and FAM134C/RETREG3 as ER-phagy receptors, which predominantly exist in an inactive state under basal conditions. Upon autophagy induction and ER stress signal, they can induce significant ER fragmentation and subsequent lysosomal degradation. FAM134A, FAM134B/RETREG1, and FAM134C are essential for maintaining ER morphology in a LC3-interacting region (LIR)-dependent manner. Overexpression of any FAM134 paralogue has the capacity to significantly augment the general ER-phagy flux upon starvation or ER-stress. Global proteomic analysis of FAM134 overexpressing and knockout cell lines reveals several protein clusters that are distinctly regulated by each of the FAM134 paralogues as well as a cluster of commonly regulated ER-resident proteins. Utilizing pro-Collagen I, as a shared ER-phagy substrate, we observe that FAM134A acts in a LIR-independent manner and compensates for the loss of FAM134B and FAM134C, respectively. FAM134C instead is unable to compensate for the loss of its paralogues. Taken together, our data show that FAM134 paralogues contribute to common and unique ER-phagy pathways.

Identifiants

pubmed: 34338405
doi: 10.15252/embr.202052289
pmc: PMC8447607
doi:

Substances chimiques

Membrane Proteins 0
Collagen 9007-34-5

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e52289

Informations de copyright

© 2021 The Authors. Published under the terms of the CC BY 4.0 license.

Références

J Chem Theory Comput. 2008 May;4(5):819-34
pubmed: 26621095
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W246-51
pubmed: 24753425
Mol Cell. 2019 Jun 6;74(5):891-908.e10
pubmed: 31006537
EMBO J. 2018 Sep 3;37(17):
pubmed: 30076131
BMC Biol. 2018 Nov 1;16(1):131
pubmed: 30382915
Nature. 2015 Jun 18;522(7556):354-8
pubmed: 26040720
J Phys Chem B. 2007 Jul 12;111(27):7812-24
pubmed: 17569554
PLoS One. 2009 Aug 24;4(8):e6613
pubmed: 19701457
Mol Cell. 2019 Jun 6;74(5):909-921.e6
pubmed: 31006538
J Cell Sci. 2013 Aug 1;126(Pt 15):3237-47
pubmed: 23908376
Nat Cell Biol. 2016 Nov;18(11):1173-1184
pubmed: 27749824
Mol Cell. 2019 Sep 5;75(5):1058-1072.e9
pubmed: 31375263
J Mol Biol. 2020 Jan 3;432(1):185-205
pubmed: 31100386
Mol Cell. 2009 Feb 27;33(4):505-16
pubmed: 19250911
Mol Cell. 2011 Jun 24;42(6):731-43
pubmed: 21700220
Curr Opin Cell Biol. 2013 Aug;25(4):428-33
pubmed: 23478217
Science. 2016 Oct 28;354(6311):
pubmed: 27789813
EMBO J. 2020 Sep 1;39(17):e105696
pubmed: 32716134
Nat Cell Biol. 2014 Jun;16(6):495-501
pubmed: 24875736
J Mol Biol. 1999 Sep 17;292(2):195-202
pubmed: 10493868
J Mol Biol. 1993 Dec 5;234(3):779-815
pubmed: 8254673
Mol Cell. 2019 Aug 8;75(3):442-456.e4
pubmed: 31176671
Int J Mol Med. 2007 Jun;19(6):915-23
pubmed: 17487424
EMBO J. 2020 Aug 3;39(15):e103649
pubmed: 32525583
J Biol Chem. 2006 Feb 17;281(7):4467-76
pubmed: 16365039
J Phys Chem Lett. 2021 Feb 25;12(7):1926-1931
pubmed: 33591770
Bioinformatics. 2013 Apr 1;29(7):845-54
pubmed: 23407358
Curr Biol. 2019 Mar 4;29(5):846-855.e6
pubmed: 30773365
Nat Commun. 2019 May 30;10(1):2370
pubmed: 31147549
J Cell Biol. 2019 Oct 7;218(10):3171-3187
pubmed: 31537714
Cell Death Dis. 2020 Nov 16;11(11):983
pubmed: 33199694
EMBO Rep. 2021 Sep 6;22(9):e52289
pubmed: 34338405
Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):E10099-E10108
pubmed: 30287488
Nat Commun. 2020 Jul 3;11(1):3306
pubmed: 32620754
Trends Cell Biol. 2020 May;30(5):384-398
pubmed: 32302550
Nat Commun. 2019 Nov 7;10(1):5058
pubmed: 31699981
Nat Commun. 2017 Nov 2;8(1):1266
pubmed: 29097687
Mol Cell Proteomics. 2011 Sep;10(9):M111.011015
pubmed: 21642640
J Cell Biol. 2014 Mar 17;204(6):869-79
pubmed: 24637321
Annu Rev Biochem. 2015;84:791-811
pubmed: 25580528
J Biol Chem. 2017 Dec 1;292(48):19656-19673
pubmed: 28972171
Life Sci Alliance. 2019 May 17;2(3):
pubmed: 31101736
Nat Genet. 2009 Nov;41(11):1179-81
pubmed: 19838196
Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2204-2209
pubmed: 29440427
Genome Res. 2003 Nov;13(11):2498-504
pubmed: 14597658
Cell Death Dis. 2020 Aug 11;11(8):691
pubmed: 32826849
Exp Mol Pathol. 2014 Aug;97(1):99-104
pubmed: 24927874
Gene. 2013 Oct 15;529(1):7-15
pubmed: 23939472
EMBO J. 2020 Mar 2;39(5):e102608
pubmed: 31930741
Acta Histochem. 2017 Apr;119(3):315-326
pubmed: 28314612
J Chem Theory Comput. 2015 May 12;11(5):2144-55
pubmed: 26574417
Dev Cell. 2018 Jan 22;44(2):217-232.e11
pubmed: 29290589
Elife. 2017 Jun 15;6:
pubmed: 28617241
Nat Commun. 2018 Sep 10;9(1):3671
pubmed: 30202070
Cell Commun Signal. 2020 Jan 27;18(1):12
pubmed: 31987044
Anal Chem. 2003 Feb 1;75(3):663-70
pubmed: 12585499
Nucleic Acids Res. 2015 Jul 1;43(W1):W401-7
pubmed: 25969446
Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6
pubmed: 18940858
EMBO J. 2019 Jan 15;38(2):
pubmed: 30559329

Auteurs

Alessio Reggio (A)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Viviana Buonomo (V)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Rayene Berkane (R)

Institute of Biochemistry II (IBC2), Faculty of Medicine, Goethe University, Frankfurt am Main, Germany.
Buchmann Institute for Molecular Life Sciences (BMLS), Goethe University, Frankfurt am Main, Germany.

Ramachandra M Bhaskara (RM)

Institute of Biochemistry II (IBC2), Faculty of Medicine, Goethe University, Frankfurt am Main, Germany.
Buchmann Institute for Molecular Life Sciences (BMLS), Goethe University, Frankfurt am Main, Germany.
Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.

Mariana Tellechea (M)

Institute of Biochemistry II (IBC2), Faculty of Medicine, Goethe University, Frankfurt am Main, Germany.
Buchmann Institute for Molecular Life Sciences (BMLS), Goethe University, Frankfurt am Main, Germany.
Structural Genomics Consortium at BMLS, Goethe University, Frankfurt am Main, Germany.

Ivana Peluso (I)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Elena Polishchuk (E)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Giorgia Di Lorenzo (G)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Carmine Cirillo (C)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Marianna Esposito (M)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Adeela Hussain (A)

Institute of Human Genetics, Jena University Hospital, Friedrich-Schiller-University, Jena, Germany.

Antje K Huebner (AK)

Institute of Human Genetics, Jena University Hospital, Friedrich-Schiller-University, Jena, Germany.

Christian A Hübner (CA)

Institute of Human Genetics, Jena University Hospital, Friedrich-Schiller-University, Jena, Germany.

Carmine Settembre (C)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Gerhard Hummer (G)

Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Institute for Biophysics, Goethe University, Frankfurt am Main, Germany.

Paolo Grumati (P)

Telethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.

Alexandra Stolz (A)

Institute of Biochemistry II (IBC2), Faculty of Medicine, Goethe University, Frankfurt am Main, Germany.
Buchmann Institute for Molecular Life Sciences (BMLS), Goethe University, Frankfurt am Main, Germany.

Articles similaires

Animals Dogs Dog Diseases Autophagy Immunohistochemistry
Humans Arthritis, Rheumatoid Lipid Metabolism Male Female
1.00
Plasmodesmata Endoplasmic Reticulum Arabidopsis Cytokinesis Arabidopsis Proteins

Classifications MeSH