Disease-related blood-based differential methylation in cystic fibrosis and its representation in lung cancer revealed a regulatory locus in
Cystic fibrosis
DNA methylation
lung cancer
lung inflammation
monozygotic twins
Journal
Epigenetics
ISSN: 1559-2308
Titre abrégé: Epigenetics
Pays: United States
ID NLM: 101265293
Informations de publication
Date de publication:
08 2022
08 2022
Historique:
pubmed:
21
8
2021
medline:
30
8
2022
entrez:
20
8
2021
Statut:
ppublish
Résumé
Cystic fibrosis (CF) is a monogenic disease, characterized by massive chronic lung inflammation. The observed variability in clinical phenotypes in monozygotic CF twins is likely associated with the extent of inflammation. This study sought to investigate inflammation-related aberrant DNA methylation in CF twins and to determine to what extent acquired methylation changes may be associated with lung cancer.Blood-based genome-wide DNA methylation analysis was performed to compare the DNA methylomes of monozygotic twins, from the European CF Twin and Sibling Study with various degrees of disease severity. Putatively inflammation-related and differentially methylated positions were selected from a large lung cancer case-control study and investigated in blood by targeted bisulphite next-generation-sequencing. An inflammation-related locus located in the
Identifiants
pubmed: 34415821
doi: 10.1080/15592294.2021.1959976
pmc: PMC9423854
doi:
Substances chimiques
PKP3 protein, human
0
Plakophilins
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
837-860Références
Nat Commun. 2015 Dec 15;6:10192
pubmed: 26667048
Trends Genet. 2000 Mar;16(3):131-4
pubmed: 10689354
J Mol Biol. 2017 May 19;429(10):1459-1475
pubmed: 28214512
JAMA Oncol. 2015 Jul;1(4):476-85
pubmed: 26181258
Genome Res. 2010 Apr;20(4):440-6
pubmed: 20219944
J Clin Invest. 2001 Dec;108(11):1705-15
pubmed: 11733566
Genome Med. 2016 Nov 22;8(1):124
pubmed: 27876072
Helv Paediatr Acta. 1978 Jun;33(2):117-25
pubmed: 659256
Pediatr Pulmonol. 2019 Sep;54(9):1356-1366
pubmed: 31140758
Development. 2018 Mar 22;145(6):
pubmed: 29567640
Epigenetics. 2011 Jul;6(7):828-37
pubmed: 21636973
Genes (Basel). 2020 May 11;11(5):
pubmed: 32403302
Epigenetics Chromatin. 2015 May 09;8:19
pubmed: 25977707
Science. 1989 Sep 8;245(4922):1066-73
pubmed: 2475911
Cell Signal. 2020 Sep;73:109672
pubmed: 32428553
BMC Bioinformatics. 2012 May 08;13:86
pubmed: 22568884
Nature. 2013 Aug 22;500(7463):477-81
pubmed: 23925113
Oncotarget. 2018 Sep 04;9(69):33149-33159
pubmed: 30237858
J Clin Invest. 2014 Jan;124(1):24-9
pubmed: 24382386
Mol Cell. 2020 Jan 16;77(2):310-323.e7
pubmed: 31732458
Sci Rep. 2018 Jan 18;8(1):1023
pubmed: 29348685
Am J Respir Crit Care Med. 2017 Jun 15;195(12):1567-1575
pubmed: 27911585
Cell. 2011 Mar 4;144(5):646-74
pubmed: 21376230
Cancer Res. 2012 Jun 1;72(11):2889-900
pubmed: 22505649
Oncotarget. 2017 Dec 14;9(6):7204-7218
pubmed: 29467962
Epigenomics. 2016 Jan;8(1):105-17
pubmed: 26678685
Am J Pathol. 2010 May;176(5):2509-19
pubmed: 20348237
Expert Rev Respir Med. 2016 Dec;10(12):1269-1280
pubmed: 27842444
J Autoimmun. 2017 Sep;83:43-50
pubmed: 28412046
Int J Cancer. 2017 Jan 1;140(1):50-61
pubmed: 27632354
Genes (Basel). 2020 Jan 18;11(1):
pubmed: 31963661
J Cyst Fibros. 2021 Jan;20(1):149-153
pubmed: 32540173
Lancet. 2016 Nov 19;388(10059):2519-2531
pubmed: 27140670
Development. 2012 Mar;139(6):1045-57
pubmed: 22354838
Onco Targets Ther. 2017 Aug 14;10:4059-4063
pubmed: 28860814
Gastric Cancer. 2017 Mar;20(Suppl 1):8-15
pubmed: 27718135
G3 (Bethesda). 2016 Apr 07;6(4):973-86
pubmed: 26888867
Mol Biol Cell. 2006 Mar;17(3):1388-98
pubmed: 16407409
J Exp Biol. 2015 Jan 1;218(Pt 1):134-9
pubmed: 25568460
Clin Genet. 2020 Jul;98(1):3-9
pubmed: 32112395
Cancer Genet Cytogenet. 2006 Aug;169(1):39-44
pubmed: 16875935
Clin Sci (Lond). 2017 Jul 1;131(13):1541-1558
pubmed: 28659395
Nat Genet. 2009 Feb;41(2):178-186
pubmed: 19151715
Transl Res. 2018 Jan;191:1-14
pubmed: 29066321
Int J Cancer. 2015 May 15;136(10):2264-72
pubmed: 25353388
Gastroenterology. 2019 Jun;156(8):2254-2265.e3
pubmed: 30779925
Semin Respir Crit Care Med. 2019 Dec;40(6):727-736
pubmed: 31887768
Biology (Basel). 2016 Jan 06;5(1):
pubmed: 26751487
Semin Respir Crit Care Med. 2019 Dec;40(6):775-791
pubmed: 31659726
Int J Environ Res Public Health. 2018 May 21;15(5):
pubmed: 29883409
J Clin Lab Anal. 2018 Jul;32(6):e22403
pubmed: 29604112
PLoS One. 2012;7(7):e41361
pubmed: 22848472
Science. 1975 Jan 24;187(4173):226-32
pubmed: 1111098
J Infect Dis. 2012 Feb 15;205(4):586-94
pubmed: 22223854
PLoS One. 2009 Aug 26;4(8):e6767
pubmed: 19774229
PLoS Genet. 2012;8(4):e1002629
pubmed: 22532803
Cell Commun Adhes. 2014 Feb;21(1):25-42
pubmed: 24460199
J Invest Dermatol. 2008 Jun;128(6):1375-85
pubmed: 18079750
Epigenetics Chromatin. 2015 Jun 23;8:22
pubmed: 26113876
Lung Cancer. 2010 Oct;70(1):14-21
pubmed: 20116881
Genome Biol. 2018 Jan 9;19(1):2
pubmed: 29310692
Int J Cancer. 2020 May 1;146(9):2460-2474
pubmed: 31997344
CA Cancer J Clin. 2019 Jan;69(1):7-34
pubmed: 30620402
Mol Endocrinol. 2010 Sep;24(9):1872-85
pubmed: 20685852
Nat Commun. 2018 Aug 8;9(1):3164
pubmed: 30089774
Pediatr Pulmonol. 2018 Nov;53(S3):S30-S50
pubmed: 29999593
Nanotoxicology. 2016;10(4):453-61
pubmed: 26375518
Sci Rep. 2018 Oct 5;8(1):14862
pubmed: 30291282
Clin Chest Med. 2016 Mar;37(1):17-29
pubmed: 26857765
Cell Mol Life Sci. 2017 Jan;74(1):129-140
pubmed: 27709245
Aging Cell. 2012 Aug;11(4):694-703
pubmed: 22621408
J Cell Sci. 2020 Apr 16;133(8):
pubmed: 32122945
N Engl J Med. 1995 Feb 23;332(8):494-9
pubmed: 7830730
Nat Genet. 2009 Dec;41(12):1350-3
pubmed: 19881528
Thorax. 2009 Jan;64(1):81-8
pubmed: 19103874
Int J Cancer. 2020 Jan 15;146(2):388-399
pubmed: 31241180
Curr Environ Health Rep. 2015 Jun;2(2):145-54
pubmed: 26231364
J Pediatr. 2010 Nov;157(5):802-7.e1-3
pubmed: 20580019
Clin Epigenetics. 2017 Dec 21;9:132
pubmed: 29299071
NPJ Precis Oncol. 2019 Mar 6;3:7
pubmed: 30854468
Nat Rev Genet. 2015 Jan;16(1):45-56
pubmed: 25404111
J Cell Biol. 2003 Apr 28;161(2):403-16
pubmed: 12707304
Clin Epigenetics. 2016 Jan 20;8:7
pubmed: 26798410
Cell. 2007 Feb 23;128(4):683-92
pubmed: 17320506
Microb Pathog. 2020 Apr;141:104019
pubmed: 32006638
Epigenetics. 2016 Mar 3;11(3):227-36
pubmed: 26891033
Genome Med. 2016 Jan 28;8(1):10
pubmed: 26823082
Nat Biotechnol. 2010 Aug;28(8):817-25
pubmed: 20657582
Cells. 2019 Aug 22;8(9):
pubmed: 31443448
J Cyst Fibros. 2015 Jul;14(4):419-30
pubmed: 25814049
Hum Mol Genet. 2012 Nov 15;21(22):4980-95
pubmed: 22899653
Semin Cancer Biol. 2012 Oct;22(5-6):417-27
pubmed: 22548723
Respir Med. 2019 Jun;152:81-88
pubmed: 31128615
Genome Biol. 2019 Jun 3;20(1):105
pubmed: 31155008
Nat Genet. 2009 Feb;41(2):240-5
pubmed: 19151718
Hum Mol Genet. 2015 Apr 15;24(8):2349-59
pubmed: 25556184
Oncotarget. 2017 Jan 17;8(3):5629-5637
pubmed: 27895318
Epigenetics. 2019 Dec;14(12):1141-1163
pubmed: 31284823
Proc Natl Acad Sci U S A. 2005 Jul 26;102(30):10604-9
pubmed: 16009939
J Thorac Dis. 2019 Oct;11(Suppl 17):S2155-S2172
pubmed: 31737343
Jpn J Clin Oncol. 2020 Jun 10;50(6):701-711
pubmed: 32083303
Differentiation. 1999 Jun;64(5):291-306
pubmed: 10374265
Genomics. 2011 Oct;98(4):288-95
pubmed: 21839163
Cancer Epidemiol Biomarkers Prev. 2017 Aug;26(8):1175-1191
pubmed: 28642230
Curr Opin Immunol. 2020 Aug;65:7-13
pubmed: 32220702
EBioMedicine. 2019 Jul;45:553-562
pubmed: 31204278
Nanotoxicology. 2019 Nov;13(9):1244-1274
pubmed: 31537143
Methods Mol Biol. 2018;1725:185-199
pubmed: 29322419
PLoS One. 2013 Oct 21;8(10):e77723
pubmed: 24204934
Clin Epigenetics. 2018 May 18;10:65
pubmed: 29796116
Nat Rev Cancer. 2013 Apr;13(4):233-45
pubmed: 23467302
Twin Res. 2000 Dec;3(4):277-93
pubmed: 11463149
Genome Res. 2007 Jun;17(6):898-909
pubmed: 17568005
J Cyst Fibros. 2017 Jul;16(4):443-453
pubmed: 27856165
Bioinformatics. 2018 Apr 15;34(8):1414-1415
pubmed: 29211825
Pediatr Pulmonol. 2007 Mar;42(3):256-62
pubmed: 17245735
Lancet Respir Med. 2016 Aug;4(8):e36
pubmed: 27377412
Epigenomics. 2015;7(1):119-26
pubmed: 25687471
J Pathol. 2015 Feb;235(3):408-19
pubmed: 25348090
Aging (Albany NY). 2015 Aug;7(8):568-78
pubmed: 26342808
Ecancermedicalscience. 2018 Sep 05;12:866
pubmed: 30263057
Cell Commun Signal. 2017 Mar 31;15(1):13
pubmed: 28359286
PLoS Genet. 2018 Aug 9;14(8):e1007544
pubmed: 30091980
PLoS Genet. 2019 Feb 26;15(2):e1008007
pubmed: 30807572
PLoS One. 2010 Apr 06;5(4):e10028
pubmed: 20386599
Comput Struct Biotechnol J. 2020 Jan 07;18:207-219
pubmed: 31993111
Nature. 2011 May 5;473(7345):43-9
pubmed: 21441907
Eur J Immunol. 2015 Oct;45(10):2898-910
pubmed: 26173741
Biotechniques. 2006 Dec;41(6):673, 675, 677 passim
pubmed: 17191608
Epigenetics Chromatin. 2013 Mar 03;6(1):4
pubmed: 23452981
Nat Methods. 2014 Nov;11(11):1138-1140
pubmed: 25262207
Oncotarget. 2018 Jul 24;9(57):31120-31132
pubmed: 30123431
BMC Cancer. 2020 Sep 22;20(1):905
pubmed: 32962699
Epigenomics. 2017 Apr;9(4):505-525
pubmed: 27885845
Med Oncol. 2012 Sep;29(3):1518-22
pubmed: 21947748
Cancer Epidemiol Biomarkers Prev. 2010 Jun;19(6):1432-40
pubmed: 20501752
Eur Respir J. 2017 Dec 28;50(6):
pubmed: 29284683
J Autoimmun. 2017 Sep;83:51-61
pubmed: 28431796
Urology. 2012 Jan;79(1):240.e1-8
pubmed: 22119253
Nature. 2017 Mar 2;543(7643):72-77
pubmed: 28225755
J Clin Med. 2019 Sep 19;8(9):
pubmed: 31546933
Nat Genet. 2011 Jun;43(6):539-46
pubmed: 21602797
Curr Cancer Drug Targets. 2018;18(1):89-96
pubmed: 28176646
CA Cancer J Clin. 2018 Nov;68(6):394-424
pubmed: 30207593
Int J Mol Sci. 2018 Apr 12;19(4):
pubmed: 29649096
Genome Biol. 2013;14(10):R115
pubmed: 24138928
Cell Syst. 2017 Dec 27;5(6):628-637.e6
pubmed: 29199022
Front Genet. 2019 Jan 09;9:697
pubmed: 30687384
Nature. 2015 Jan 15;517(7534):293-301
pubmed: 25592534
Cancer Cell. 2014 Oct 13;26(4):577-90
pubmed: 25263941
Nat Struct Mol Biol. 2013 Mar;20(3):274-81
pubmed: 23463312
Nat Rev Cancer. 2011 May;11(5):317-23
pubmed: 21508970
JCI Insight. 2018 Mar 8;3(5):
pubmed: 29515024
Pharmacogenetics. 2001 Dec;11(9):757-64
pubmed: 11740339
Cancer Res. 2005 Aug 15;65(16):7102-10
pubmed: 16103059
PLoS Genet. 2014 Mar 06;10(3):e1004158
pubmed: 24603652
Cancer Lett. 2011 Jun 28;305(2):123-43
pubmed: 21168955
Microbiome. 2016 Nov 1;4(1):58
pubmed: 27802830