Federated learning for predicting clinical outcomes in patients with COVID-19.


Journal

Nature medicine
ISSN: 1546-170X
Titre abrégé: Nat Med
Pays: United States
ID NLM: 9502015

Informations de publication

Date de publication:
10 2021
Historique:
received: 21 12 2020
accepted: 13 08 2021
pubmed: 17 9 2021
medline: 27 10 2021
entrez: 16 9 2021
Statut: ppublish

Résumé

Federated learning (FL) is a method used for training artificial intelligence models with data from multiple sources while maintaining data anonymity, thus removing many barriers to data sharing. Here we used data from 20 institutes across the globe to train a FL model, called EXAM (electronic medical record (EMR) chest X-ray AI model), that predicts the future oxygen requirements of symptomatic patients with COVID-19 using inputs of vital signs, laboratory data and chest X-rays. EXAM achieved an average area under the curve (AUC) >0.92 for predicting outcomes at 24 and 72 h from the time of initial presentation to the emergency room, and it provided 16% improvement in average AUC measured across all participating sites and an average increase in generalizability of 38% when compared with models trained at a single site using that site's data. For prediction of mechanical ventilation treatment or death at 24 h at the largest independent test site, EXAM achieved a sensitivity of 0.950 and specificity of 0.882. In this study, FL facilitated rapid data science collaboration without data exchange and generated a model that generalized across heterogeneous, unharmonized datasets for prediction of clinical outcomes in patients with COVID-19, setting the stage for the broader use of FL in healthcare.

Identifiants

pubmed: 34526699
doi: 10.1038/s41591-021-01506-3
pii: 10.1038/s41591-021-01506-3
pmc: PMC9157510
mid: NIHMS1800647
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1735-1743

Subventions

Organisme : NHLBI NIH HHS
ID : R01 HL141237
Pays : United States
Organisme : NHLBI NIH HHS
ID : R42 HL145669
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA008748
Pays : United States
Organisme : Intramural NIH HHS
ID : ZID BC011242
Pays : United States
Organisme : Intramural NIH HHS
ID : ZIA CL040015
Pays : United States
Organisme : NLM NIH HHS
ID : R01 LM013151
Pays : United States

Commentaires et corrections

Type : UpdateOf

Informations de copyright

© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Auteurs

Ittai Dayan (I)

MGH Radiology and Harvard Medical School, Boston, MA, USA.

Holger R Roth (HR)

NVIDIA, Santa Clara, CA, USA.

Aoxiao Zhong (A)

Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.

Ahmed Harouni (A)

NVIDIA, Santa Clara, CA, USA.

Amilcare Gentili (A)

San Diego VA Health Care System, San Diego, CA, USA.

Anas Z Abidin (AZ)

NVIDIA, Santa Clara, CA, USA.

Andrew Liu (A)

NVIDIA, Santa Clara, CA, USA.

Anthony Beardsworth Costa (AB)

Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Bradford J Wood (BJ)

Radiology & Imaging Sciences/Clinical Center, National Institutes of Health, Bethesda, MD, USA.
National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

Chien-Sung Tsai (CS)

Division of Cardiovascular Surgery, Department of Surgery, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.

Chih-Hung Wang (CH)

Department of Otolaryngology-Head and Neck Surgery, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.
Graduate Institute of Medical Sciences, National Defense Medical Center, Taipei, Taiwan.

Chun-Nan Hsu (CN)

Center for Research in Biological Systems, University of California, San Diego, CA, USA.

C K Lee (CK)

NVIDIA, Santa Clara, CA, USA.

Peiying Ruan (P)

NVIDIA, Santa Clara, CA, USA.

Daguang Xu (D)

NVIDIA, Santa Clara, CA, USA.

Dufan Wu (D)

Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

Eddie Huang (E)

NVIDIA, Santa Clara, CA, USA.

Felipe Campos Kitamura (FC)

DasaInova, Diagnósticos da América SA, Barueri, Brazil.

Griffin Lacey (G)

NVIDIA, Santa Clara, CA, USA.

Gustavo César de Antônio Corradi (GC)

DasaInova, Diagnósticos da América SA, Barueri, Brazil.

Gustavo Nino (G)

Division of Pediatric Pulmonary and Sleep Medicine, Children's National Hospital, Washington, DC, USA.

Hao-Hsin Shin (HH)

Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Hirofumi Obinata (H)

Self-Defense Forces Central Hospital, Tokyo, Japan.

Hui Ren (H)

Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

Jason C Crane (JC)

Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.

Jesse Tetreault (J)

NVIDIA, Santa Clara, CA, USA.

Jiahui Guan (J)

NVIDIA, Santa Clara, CA, USA.

John W Garrett (JW)

Departments of Radiology and Medical Physics, The University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.

Joshua D Kaggie (JD)

Department of Radiology, NIHR Cambridge Biomedical Resource Centre, University of Cambridge, Cambridge, UK.

Jung Gil Park (JG)

Department of Internal Medicine, Yeungnam University College of Medicine, Daegu, South Korea.

Keith Dreyer (K)

MGH Radiology and Harvard Medical School, Boston, MA, USA.
Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.

Krishna Juluru (K)

Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Kristopher Kersten (K)

NVIDIA, Santa Clara, CA, USA.

Marcio Aloisio Bezerra Cavalcanti Rockenbach (MABC)

Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.

Marius George Linguraru (MG)

Sheikh Zayed Institute for Pediatric Surgical Innovation, Children's National Hospital, Washington, DC, USA.
Departments of Radiology and Pediatrics, The George Washington University School of Medicine and Health Sciences, Washington, DC, USA.

Masoom A Haider (MA)

Joint Dept. of Medical Imaging, Sinai Health System, University of Toronto, Toronto, Ontario, Canada.
Lunenfeld-Tanenbaum Research Institute, Toronto, Ontario, Canada.

Meena AbdelMaseeh (M)

Lunenfeld-Tanenbaum Research Institute, Toronto, Ontario, Canada.

Nicola Rieke (N)

NVIDIA, Santa Clara, CA, USA.

Pablo F Damasceno (PF)

Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.

Pedro Mario Cruz E Silva (PMC)

NVIDIA, Santa Clara, CA, USA.

Pochuan Wang (P)

MeDA Lab Institute of Applied Mathematical Sciences, National Taiwan University, Taipei, Taiwan.
Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan.

Sheng Xu (S)

Radiology & Imaging Sciences/Clinical Center, National Institutes of Health, Bethesda, MD, USA.
National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

Shuichi Kawano (S)

Self-Defense Forces Central Hospital, Tokyo, Japan.

Sira Sriswasdi (S)

Research Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Center for Artificial Intelligence in Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.

Soo Young Park (SY)

Department of Internal Medicine, School of Medicine, Kyungpook National University, Daegu, South Korea.

Thomas M Grist (TM)

Departments of Radiology, Medical Physics, and Biomedical Engineering, The University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.

Varun Buch (V)

Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.

Watsamon Jantarabenjakul (W)

Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Thai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok, Thailand.

Weichung Wang (W)

MeDA Lab Institute of Applied Mathematical Sciences, National Taiwan University, Taipei, Taiwan.
Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan.

Won Young Tak (WY)

Department of Internal Medicine, School of Medicine, Kyungpook National University, Daegu, South Korea.

Xiang Li (X)

Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

Xihong Lin (X)

Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, USA.

Young Joon Kwon (YJ)

Department of Neurosurgery, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Abood Quraini (A)

NVIDIA, Santa Clara, CA, USA.

Andrew Feng (A)

NVIDIA, Santa Clara, CA, USA.

Andrew N Priest (AN)

Department of Radiology, NIHR Cambridge Biomedical Resource Centre, Cambridge University Hospital, Cambridge, UK.

Baris Turkbey (B)

National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Department of Radiology and Imaging Sciences, National Institutes of Health, Bethesda, MD, USA.

Benjamin Glicksberg (B)

Hasso Plattner Institute for Digital Health at Mount Sinai, Icahn School of Medicine at Mount Sinai and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Bernardo Bizzo (B)

Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.

Byung Seok Kim (BS)

Department of Internal Medicine, Catholic University of Daegu School of Medicine, Daegu, South Korea.

Carlos Tor-Díez (C)

Sheikh Zayed Institute for Pediatric Surgical Innovation, Children's National Hospital, Washington, DC, USA.

Chia-Cheng Lee (CC)

Planning and Management Office, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.

Chia-Jung Hsu (CJ)

Planning and Management Office, Tri-Service General Hospital, National Defense Medical Center, Taipei, Taiwan.

Chin Lin (C)

School of Medicine, National Defense Medical Center, Taipei, Taiwan.
School of Public Health, National Defense Medical Center, Taipei, Taiwan.
Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan.

Chiu-Ling Lai (CL)

Medical Review and Pharmaceutical Benefits Division, National Health Insurance Administration, Taipei, Taiwan.

Christopher P Hess (CP)

Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.

Colin Compas (C)

NVIDIA, Santa Clara, CA, USA.

Deepeksha Bhatia (D)

NVIDIA, Santa Clara, CA, USA.

Eric K Oermann (EK)

Department of Neurosurgery, NYU Grossman School of Medicine, New York, NY, USA.

Evan Leibovitz (E)

Center for Clinical Data Science, Massachusetts General Brigham, Boston, MA, USA.

Hisashi Sasaki (H)

Self-Defense Forces Central Hospital, Tokyo, Japan.

Hitoshi Mori (H)

Self-Defense Forces Central Hospital, Tokyo, Japan.

Isaac Yang (I)

NVIDIA, Santa Clara, CA, USA.

Jae Ho Sohn (JH)

Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.

Krishna Nand Keshava Murthy (KNK)

Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Li-Chen Fu (LC)

MOST/NTU All Vista Healthcare Center, Center for Artificial Intelligence and Advanced Robotics, National Taiwan University, Taipei, Taiwan.

Matheus Ribeiro Furtado de Mendonça (MRF)

DasaInova, Diagnósticos da América SA, Barueri, Brazil.

Mike Fralick (M)

Division of General Internal Medicine and Geriatrics (Fralick), Sinai Health System, Toronto, Ontario, Canada.

Min Kyu Kang (MK)

Department of Internal Medicine, Yeungnam University College of Medicine, Daegu, South Korea.

Mohammad Adil (M)

NVIDIA, Santa Clara, CA, USA.

Natalie Gangai (N)

Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Peerapon Vateekul (P)

Department of Computer Engineering, Faculty of Engineering, Chulalongkorn University, Bangkok, Thailand.

Pierre Elnajjar (P)

Memorial Sloan Kettering Cancer Center, New York, NY, USA.

Sarah Hickman (S)

Department of Radiology, NIHR Cambridge Biomedical Resource Centre, University of Cambridge, Cambridge, UK.

Sharmila Majumdar (S)

Center for Intelligent Imaging, Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA.

Shelley L McLeod (SL)

Schwartz/Reisman Emergency Medicine Institute, Sinai Health, Toronto, Ontario, Canada.
Department of Family and Community Medicine, University of Toronto, Toronto, Ontario, Canada.

Sheridan Reed (S)

Radiology & Imaging Sciences/Clinical Center, National Institutes of Health, Bethesda, MD, USA.
National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

Stefan Gräf (S)

Department of Medicine and NIHR BioResource for Translational Research, NIHR Cambridge Biomedical Research Centre, University of Cambridge, Cambridge, UK.

Stephanie Harmon (S)

National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Clinical Research Directorate, Frederick National Laboratory for Cancer, National Cancer Institute, Frederick, MD, USA.

Tatsuya Kodama (T)

Self-Defense Forces Central Hospital, Tokyo, Japan.

Thanyawee Puthanakit (T)

Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
Thai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok, Thailand.

Tony Mazzulli (T)

Department of Microbiology, Sinai Health/University Health Network, Toronto, Ontario, Canada.
Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada.
Public Health Ontario Laboratories, Toronto, Ontario, Canada.

Vitor Lima de Lavor (VL)

DasaInova, Diagnósticos da América SA, Barueri, Brazil.

Yothin Rakvongthai (Y)

Chulalongkorn University Biomedical Imaging Group and Division of Nuclear Medicine, Department of Radiology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.

Yu Rim Lee (YR)

Department of Internal Medicine, School of Medicine, Kyungpook National University, Daegu, South Korea.

Yuhong Wen (Y)

NVIDIA, Santa Clara, CA, USA.

Fiona J Gilbert (FJ)

Department of Radiology, NIHR Cambridge Biomedical Resource Centre, University of Cambridge, Cambridge, UK.

Mona G Flores (MG)

NVIDIA, Santa Clara, CA, USA. mflores@nvidia.com.

Quanzheng Li (Q)

Center for Advanced Medical Computing and Analysis, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.

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