Whole genome sequencing reveals a complex introgression history and the basis of adaptation to subarctic climate in wild sheep.


Journal

Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478

Informations de publication

Date de publication:
12 2021
Historique:
revised: 01 09 2021
received: 17 05 2021
accepted: 07 09 2021
pubmed: 18 9 2021
medline: 29 1 2022
entrez: 17 9 2021
Statut: ppublish

Résumé

To predict species responses to anthropogenic disturbances and climate change, it is reasonable to use species with high sensitivity to such factors. Snow sheep (Ovis nivicola) could represent a good candidate for this; as the only large herbivore species adapted to the cold and alpine habitats of northeastern Siberia, it plays a crucial role in its ecosystem. Despite having an extensive geographical distribution among all ovine species, it is one of the least studied. In this study, we sequenced and analysed six genomes of snow sheep in combination with all other wild sheep species to infer key aspects of their evolutionary history and unveil the genetic basis of their adaptation to subarctic environments. Despite their large census population size, snow sheep genomes showed remarkably low heterozygosity, which could reflect the effect of isolation and historical bottlenecks that we inferred using the pairwise sequential Markovian coalescent and runs of homozygosity. F

Identifiants

pubmed: 34534381
doi: 10.1111/mec.16184
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

6701-6717

Subventions

Organisme : Ministry of Science and Higher Education of the Russian Federation
ID : 0445-2019-0024
Organisme : Russian Science Foundation within Project No.
ID : 21-66-00007

Informations de copyright

© 2021 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.

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Auteurs

Maulik Upadhyay (M)

Population Genomics Group, Department of Veterinary Sciences, LMU Munich, Munich, Germany.

Elisabeth Kunz (E)

Population Genomics Group, Department of Veterinary Sciences, LMU Munich, Munich, Germany.

Edson Sandoval-Castellanos (E)

Population Genomics Group, Department of Veterinary Sciences, LMU Munich, Munich, Germany.

Andreas Hauser (A)

Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany.

Stefan Krebs (S)

Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany.

Alexander Graf (A)

Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany.

Helmut Blum (H)

Laboratory for Functional Genome Analysis, Gene Center, LMU Munich, Munich, Germany.

Arsen Dotsev (A)

L.K. Ernst Federal Science Center for Animal Husbandry, Podolsk, Russia.

Innokentiy Okhlopkov (I)

Institute for Biological Problems of Cryolithozone, Yakutsk, Russia.

Alexey Shakhin (A)

L.K. Ernst Federal Science Center for Animal Husbandry, Podolsk, Russia.

Vugar Bagirov (V)

L.K. Ernst Federal Science Center for Animal Husbandry, Podolsk, Russia.

Gottfried Brem (G)

Institute of Animal Breeding and Genetics, VMU, Vienna, Austria.

Ruedi Fries (R)

Lehrstuhl für Tierzucht, Technische Universität München, Freising, Germany.

Natalia Zinovieva (N)

L.K. Ernst Federal Science Center for Animal Husbandry, Podolsk, Russia.

Ivica Medugorac (I)

Population Genomics Group, Department of Veterinary Sciences, LMU Munich, Munich, Germany.

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