Accurate diagnosis of lung tissues for 2D Raman spectrogram by deep learning based on short-time Fourier transform.

Deep learning Lung cancer Raman spectrogram Short-time Fourier transform

Journal

Analytica chimica acta
ISSN: 1873-4324
Titre abrégé: Anal Chim Acta
Pays: Netherlands
ID NLM: 0370534

Informations de publication

Date de publication:
22 Sep 2021
Historique:
received: 19 03 2021
revised: 29 06 2021
accepted: 30 06 2021
entrez: 18 9 2021
pubmed: 19 9 2021
medline: 22 9 2021
Statut: ppublish

Résumé

Multivariate statistical analysis methods have an important role in spectrochemical analyses to rapidly identify and diagnose cancer and the subtype. However, utilizing these methods to analyze lager amount spectral data is challenging, and poses a major bottleneck toward achieving high accuracy. Here, a new convolutional neural networks (CNN) method based on short-time Fourier transform (STFT) to diagnose lung tissues via Raman spectra readily is proposed. The models yield that the accuracies of the new method are higher than the conventional methods (principal components analysis -linear discriminant analysis and support vector machine) for validation group (95.2% vs 85.5%, 94.4%) and test group (96.5% vs 90.4%, 93.9%) after cross-validation. The results illustrate that the new method which converts one-dimensional Raman data into two-dimensional Raman spectrograms improve the discriminatory ability of lung tissues and can achieve automatically accurate diagnosis of lung tissues.

Identifiants

pubmed: 34535256
pii: S0003-2670(21)00647-4
doi: 10.1016/j.aca.2021.338821
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

338821

Informations de copyright

Copyright © 2021 Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Yafeng Qi (Y)

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.

Lin Yang (L)

Department of Pathology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China.

Bangxu Liu (B)

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.

Li Liu (L)

Department of Pathology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China.

Yuhong Liu (Y)

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China. Electronic address: liuyuhong@tsinghua.edu.cn.

Qingfeng Zheng (Q)

Department of Thoracic Surgery, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100021, China. Electronic address: qfzhengpku@163.com.

Dameng Liu (D)

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China. Electronic address: ldm@tsinghua.edu.cn.

Jianbin Luo (J)

State Key Laboratory of Tribology, Tsinghua University, Beijing 100084, China.

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Classifications MeSH