Genomics-based re-examination of the taxonomy and phylogeny of human and simian Mastadenoviruses: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis.
Journal
Cladistics : the international journal of the Willi Hennig Society
ISSN: 1096-0031
Titre abrégé: Cladistics
Pays: United States
ID NLM: 9881057
Informations de publication
Date de publication:
08 2020
08 2020
Historique:
accepted:
28
04
2020
entrez:
7
10
2021
pubmed:
1
8
2020
medline:
11
2
2022
Statut:
ppublish
Résumé
With the advent of high-resolution and cost-effective genomics and bioinformatics tools and methods contributing to a large database of both human (HAdV) and simian (SAdV) adenoviruses, a genomics-based re-evaluation of their taxonomy is warranted. Interest in these particular adenoviruses is growing in part due to the applications of both in gene transfer protocols, including gene therapy and vaccines, as well in oncolytic protocols. In particular, the re-evaluation of SAdVs as appropriate vectors in humans is important as zoonosis precludes the assumption that human immune system may be naïve to these vectors. Additionally, as important pathogens, adenoviruses are a model organism system for understanding viral pathogen emergence through zoonosis and anthroponosis, particularly among the primate species, along with recombination, host adaptation, and selection, as evidenced by one long-standing human respiratory pathogen HAdV-4 and a recent re-evaluation of another, HAdV-76. The latter reflects the insights on amphizoonosis, defined as infections in both directions among host species including "other than human", that are possible with the growing database of nonhuman adenovirus genomes. HAdV-76 is a recombinant that has been isolated from human, chimpanzee, and bonobo hosts. On-going and potential impacts of adenoviruses on public health and translational medicine drive this evaluation of 174 whole genome sequences from HAdVs and SAdVs archived in GenBank. The conclusion is that rather than separate HAdV and SAdV phylogenetic lineages, a single, intertwined tree is observed with all HAdVs and SAdVs forming mixed clades. Therefore, a single designation of "primate adenovirus" (PrAdV) superseding either HAdV and SAdV is proposed, or alternatively, keeping HAdV for human adenovirus but expanding the SAdV nomenclature officially to include host species identification as in ChAdV for chimpanzee adenovirus, GoAdV for gorilla adenovirus, BoAdV for bonobo adenovirus, and ad libitum.
Identifiants
pubmed: 34618969
doi: 10.1111/cla.12422
pmc: PMC8964269
mid: NIHMS1787707
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
358-373Subventions
Organisme : NEI NIH HHS
ID : R01 EY021558
Pays : United States
Organisme : U.S. Public Health Service
ID : EY013124
Organisme : U.S. Public Health Service
ID : EY014104
Organisme : Research to Prevent Blindness Senior Scientific Investigator Award
Organisme : NEI NIH HHS
ID : P30 EY014104
Pays : United States
Organisme : U.S. Public Health Service
ID : EY021558
Organisme : NEI NIH HHS
ID : R01 EY013124
Pays : United States
Informations de copyright
© 2020 Willi Hennig Society.
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