DREAM represses distinct targets by cooperating with different THAP domain proteins.


Journal

Cell reports
ISSN: 2211-1247
Titre abrégé: Cell Rep
Pays: United States
ID NLM: 101573691

Informations de publication

Date de publication:
19 10 2021
Historique:
received: 28 08 2020
revised: 03 06 2021
accepted: 24 09 2021
entrez: 23 10 2021
pubmed: 24 10 2021
medline: 16 2 2022
Statut: ppublish

Résumé

The DREAM (dimerization partner [DP], retinoblastoma [Rb]-like, E2F, and MuvB) complex controls cellular quiescence by repressing cell-cycle and other genes, but its mechanism of action is unclear. Here, we demonstrate that two C. elegans THAP domain proteins, LIN-15B and LIN-36, co-localize with DREAM and function by different mechanisms for repression of distinct sets of targets. LIN-36 represses classical cell-cycle targets by promoting DREAM binding and gene body enrichment of H2A.Z, and we find that DREAM subunit EFL-1/E2F is specific for LIN-36 targets. In contrast, LIN-15B represses germline-specific targets in the soma by facilitating H3K9me2 promoter marking. We further find that LIN-36 and LIN-15B differently regulate DREAM binding. In humans, THAP proteins have been implicated in cell-cycle regulation by poorly understood mechanisms. We propose that THAP domain proteins are key mediators of Rb/DREAM function.

Identifiants

pubmed: 34686342
pii: S2211-1247(21)01299-7
doi: 10.1016/j.celrep.2021.109835
pmc: PMC8552245
pii:
doi:

Substances chimiques

Caenorhabditis elegans Proteins 0
Cell Cycle Proteins 0
E2F Transcription Factors 0
Histones 0
Retinoblastoma Protein 0
Transcription Factors 0
efl-1 protein, C elegans 0
lin-15B protein, C elegans 0
lin-36 protein, C elegans 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

109835

Subventions

Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 101863
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/S021620/1
Pays : United Kingdom
Organisme : Wellcome
ID : 092096
Organisme : Cancer Research UK
ID : C6946/A14492
Pays : United Kingdom

Informations de copyright

Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests The authors declare no competing interests.

Références

Nucleic Acids Res. 2016 Jul 8;44(W1):W160-5
pubmed: 27079975
Elife. 2015 Apr 23;4:
pubmed: 25905672
Nat Rev Mol Cell Biol. 2013 May;14(5):297-306
pubmed: 23594950
Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10745-E10754
pubmed: 29183983
Cell. 2004 Oct 15;119(2):181-93
pubmed: 15479636
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Genome Res. 2004 Oct;14(10B):2162-8
pubmed: 15489339
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Genetics. 2015 Sep;201(1):47-54
pubmed: 26187122
Curr Protoc Mol Biol. 2006 Feb;Chapter 29:Unit 29A.1
pubmed: 18265381
Genes Dev. 2011 Apr 15;25(8):801-13
pubmed: 21498570
Cell. 1998 Dec 23;95(7):981-91
pubmed: 9875852
Nat Rev Cancer. 2009 Mar;9(3):153-66
pubmed: 19238148
Genome Biol. 2016 Jul 05;17(1):148
pubmed: 27380939
Cell Rep. 2018 Dec 4;25(10):2797-2807.e8
pubmed: 30517867
Nucleic Acids Res. 2016 Jan 4;44(D1):D81-9
pubmed: 26612867
Nat Rev Cancer. 2013 Aug;13(8):585-95
pubmed: 23842645
Nature. 2000 Nov 16;408(6810):325-30
pubmed: 11099033
FEBS J. 2010 Feb;277(4):877-93
pubmed: 20015071
BMC Dev Biol. 2007 Apr 06;7:30
pubmed: 17417969
J Biomol NMR. 2013 May;56(1):3-15
pubmed: 23306615
Bioinformatics. 2010 Mar 1;26(5):589-95
pubmed: 20080505
Oncogene. 2019 Jun;38(25):4962-4976
pubmed: 30833638
Nature. 1992 Sep 24;359(6393):288-94
pubmed: 1406932
PLoS Genet. 2011 May;7(5):e1002074
pubmed: 21589891
Genome Biol. 2014;15(12):550
pubmed: 25516281
Cell Rep. 2014 Nov 6;9(3):967-82
pubmed: 25437553
Elife. 2018 Oct 26;7:
pubmed: 30362940
J Gen Virol. 2011 Nov;92(Pt 11):2620-2627
pubmed: 21813705
PLoS One. 2011;6(5):e20082
pubmed: 21637852
Mol Cancer Res. 2013 Nov;11(11):1314-25
pubmed: 24045973
Oncogene. 2012 Apr 5;31(14):1859-68
pubmed: 21860417
Genetics. 2019 May;212(1):125-140
pubmed: 30910798
IEEE Trans Vis Comput Graph. 2014 Dec;20(12):1983-92
pubmed: 26356912
Mol Cell. 2001 Mar;7(3):451-60
pubmed: 11463371
Dev Biol. 2007 May 15;305(2):674-84
pubmed: 17368442
Science. 2017 Aug 18;357(6352):661-667
pubmed: 28818938
Nat Genet. 2008 Nov;40(11):1375-83
pubmed: 18953339
Nature. 2003 Jan 16;421(6920):231-7
pubmed: 12529635
WormBook. 2006 Feb 11;:1-11
pubmed: 18050451
PLoS Genet. 2010 Jan 22;6(1):e1000830
pubmed: 20107519
Proc Natl Acad Sci U S A. 2005 May 10;102(19):6907-12
pubmed: 15863623
Genome Biol. 2008;9(9):R137
pubmed: 18798982
Mol Cell Biol. 2010 Jun;30(12):2896-908
pubmed: 20404087
EMBO J. 2005 Jul 20;24(14):2613-23
pubmed: 15990876
Nat Cell Biol. 2004 Aug;6(8):777-83
pubmed: 15247923
Cell. 2004 Aug 20;118(4):439-52
pubmed: 15315757
Bioinformatics. 1998;14(9):755-63
pubmed: 9918945
Cell Cycle. 2007 Aug 1;6(15):1903-13
pubmed: 17671431
Genes Dev. 2002 Apr 15;16(8):933-47
pubmed: 11959842
Chembiochem. 2003 Aug 4;4(8):683-7
pubmed: 12898617
Genetics. 2014 Nov;198(3):837-46
pubmed: 25161212
Blood. 2007 Jan 15;109(2):584-94
pubmed: 17003378
Genes Dev. 2004 Dec 1;18(23):2929-40
pubmed: 15545624
MicroPubl Biol. 2018 Mar 27;2018:
pubmed: 32550381
Am J Physiol Heart Circ Physiol. 2009 Aug;297(2):H643-53
pubmed: 19502560
J Mol Neurosci. 2017 May;62(1):11-16
pubmed: 28299530
Curr Biol. 2002 Jun 4;12(11):906-11
pubmed: 12062054
Nucleic Acids Res. 2011 Aug;39(15):e103
pubmed: 21646344
Genetics. 2006 Feb;172(2):915-28
pubmed: 16322520
Mol Cell. 2007 May 25;26(4):539-51
pubmed: 17531812
Genes Dev. 2015 Mar 1;29(5):495-500
pubmed: 25737279
Genes Dev. 1996 May 15;10(10):1206-18
pubmed: 8675008
Bioinformatics. 2010 Mar 15;26(6):841-2
pubmed: 20110278
Trends Biochem Sci. 2003 Feb;28(2):66-9
pubmed: 12575992
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8
pubmed: 19458158
PLoS Genet. 2017 Nov 1;13(11):e1007088
pubmed: 29091720
BMC Dev Biol. 2007 Apr 27;7:38
pubmed: 17466069

Auteurs

Csenge Gal (C)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Francesco Nicola Carelli (FN)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Alex Appert (A)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Chiara Cerrato (C)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Ni Huang (N)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Yan Dong (Y)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Jane Murphy (J)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Andrea Frapporti (A)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK.

Julie Ahringer (J)

Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Genetics, University of Cambridge, Cambridge, UK. Electronic address: ja219@cam.ac.uk.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH