The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks.
Comparative genomics
Fungi
Hybrids
Nomenclature
Species concepts
Taxonomy
Journal
Fungal diversity
ISSN: 1560-2745
Titre abrégé: Fungal Divers
Pays: China
ID NLM: 100955518
Informations de publication
Date de publication:
2021
2021
Historique:
received:
10
11
2020
accepted:
31
05
2021
entrez:
1
11
2021
pubmed:
2
11
2021
medline:
2
11
2021
Statut:
ppublish
Résumé
Here we review how evolving species concepts have been applied to understand yeast diversity. Initially, a phenotypic species concept was utilized taking into consideration morphological aspects of colonies and cells, and growth profiles. Later the biological species concept was added, which applied data from mating experiments. Biophysical measurements of DNA similarity between isolates were an early measure that became more broadly applied with the advent of sequencing technology, leading to a sequence-based species concept using comparisons of parts of the ribosomal DNA. At present phylogenetic species concepts that employ sequence data of rDNA and other genes are universally applied in fungal taxonomy, including yeasts, because various studies revealed a relatively good correlation between the biological species concept and sequence divergence. The application of genome information is becoming increasingly common, and we strongly recommend the use of complete, rather than draft genomes to improve our understanding of species and their genome and genetic dynamics. Complete genomes allow in-depth comparisons on the evolvability of genomes and, consequently, of the species to which they belong. Hybridization seems a relatively common phenomenon and has been observed in all major fungal lineages that contain yeasts. Note that hybrids may greatly differ in their post-hybridization development. Future in-depth studies, initially using some model species or complexes may shift the traditional species concept as isolated clusters of genetically compatible isolates to a cohesive speciation network in which such clusters are interconnected by genetic processes, such as hybridization.
Identifiants
pubmed: 34720775
doi: 10.1007/s13225-021-00475-9
pii: 475
pmc: PMC8550739
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
27-55Subventions
Organisme : NIAID NIH HHS
ID : R01 AI039115
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI050113
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI133654
Pays : United States
Organisme : NIAID NIH HHS
ID : R37 AI039115
Pays : United States
Informations de copyright
© The Author(s) 2021, corrected publication 2021.
Déclaration de conflit d'intérêts
Conflict of interestThere is no conflict of interest.
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