Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
05 11 2021
05 11 2021
Historique:
received:
25
11
2020
accepted:
15
10
2021
entrez:
6
11
2021
pubmed:
7
11
2021
medline:
28
12
2021
Statut:
epublish
Résumé
While transcriptome- and proteome-wide technologies to assess processes in protein biogenesis are now widely available, we still lack global approaches to assay post-ribosomal biogenesis events, in particular those occurring in the eukaryotic secretory system. We here develop a method, SECRiFY, to simultaneously assess the secretability of >10
Identifiants
pubmed: 34741024
doi: 10.1038/s41467-021-26720-y
pii: 10.1038/s41467-021-26720-y
pmc: PMC8571348
doi:
Substances chimiques
Proteome
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
6414Commentaires et corrections
Type : ErratumIn
Informations de copyright
© 2021. The Author(s).
Références
J Mol Evol. 2003 Jul;57(1):98-109
pubmed: 12962310
Nature. 2016 Aug 11;536(7615):224-8
pubmed: 27487213
Mol Syst Biol. 2010 Dec 21;6:450
pubmed: 21179022
Cold Spring Harb Perspect Biol. 2013 May 01;5(5):a013201
pubmed: 23637286
Nat Protoc. 2007;2(1):31-4
pubmed: 17401334
Crit Rev Biochem Mol Biol. 2013 May-Jun;48(3):273-88
pubmed: 23530742
Bioinformatics. 2012 Dec 1;28(23):3150-2
pubmed: 23060610
Nature. 2011 Jul 10;475(7356):394-7
pubmed: 21743475
Curr Opin Cell Biol. 2014 Aug;29:8-17
pubmed: 24662022
Nat Commun. 2016 Jun 10;7:11786
pubmed: 27283361
J Immunol Methods. 2012 Jan 31;375(1-2):159-65
pubmed: 22019510
EMBO Rep. 2012 Mar 01;13(3):272-7
pubmed: 22249164
PLoS One. 2013 Sep 27;8(9):e75212
pubmed: 24086469
Proc Natl Acad Sci U S A. 1980 Mar;77(3):1632-6
pubmed: 6929513
Nat Biotechnol. 2003 Feb;21(2):163-70
pubmed: 12536217
J Mol Biol. 1997 May 2;268(2):284-302
pubmed: 9159471
Nucleic Acids Res. 2011 Oct;39(18):e125
pubmed: 21771856
Cell. 1986 May 9;45(3):397-406
pubmed: 3009026
Nature. 2015 May 28;521(7553):436-44
pubmed: 26017442
Nature. 1979 Feb 8;277(5696):491-2
pubmed: 763335
J Mol Biol. 1999 Oct 8;292(5):949-56
pubmed: 10512694
Sci Rep. 2017 Aug 18;7(1):8826
pubmed: 28821744
Curr Opin Biotechnol. 2006 Aug;17(4):353-8
pubmed: 16781139
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
J Biotechnol. 2005 Oct 10;119(4):379-88
pubmed: 15982773
Protein Sci. 2008 Apr;17(4):673-80
pubmed: 18305199
Genome Res. 2004 Oct;14(10B):2102-10
pubmed: 15489332
Protein Eng Des Sel. 2011 Jul;24(7):565-78
pubmed: 21642284
Science. 2011 Sep 30;333(6051):1891-4
pubmed: 21852455
Curr Opin Struct Biol. 2013 Jun;23(3):403-8
pubmed: 23602357
Hum Mutat. 2009 Mar;30(3):431-7
pubmed: 19156839
Trends Genet. 2000 Jun;16(6):276-7
pubmed: 10827456
Nature. 2003 Oct 16;425(6959):737-41
pubmed: 14562106
Nature. 2012 Sep 6;489(7414):101-8
pubmed: 22955620
Science. 1985 Aug 30;229(4716):834-8
pubmed: 4023714
J Mol Biol. 1982 May 5;157(1):105-32
pubmed: 7108955
Nat Biotechnol. 2009 Jun;27(6):561-6
pubmed: 19465926
Sci STKE. 2003 Apr 22;2003(179):RE8
pubmed: 12709533
Science. 2009 Apr 10;324(5924):218-23
pubmed: 19213877
Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1496-1503
pubmed: 31896580
Cell. 2008 Aug 8;134(3):534-45
pubmed: 18692475
J Cell Biol. 2016 Jun 20;213(6):693-704
pubmed: 27325793
FEBS Lett. 2012 Aug 14;586(17):2586-96
pubmed: 22710164
Protein Sci. 2006 Aug;15(8):1987-2001
pubmed: 16877712
Cell Chem Biol. 2017 Jun 22;24(6):767-771.e3
pubmed: 28602759
Anal Biochem. 2011 Sep 1;416(1):141-3
pubmed: 21530478
Protein Sci. 2006 Oct;15(10):2356-65
pubmed: 17008718
J Struct Biol. 2010 Oct;172(1):66-74
pubmed: 20206698
Biotechnol J. 2019 Apr;14(4):e1800353
pubmed: 30171735
Nat Cell Biol. 2012 Jun 03;14(7):764-74
pubmed: 22660414
Science. 2017 Feb 24;355(6327):
pubmed: 28232526
J Theor Biol. 1968 Nov;21(2):170-201
pubmed: 5700434
Nat Protoc. 2007;2(1):38-41
pubmed: 17401336
Cell. 2007 Nov 16;131(4):809-21
pubmed: 18022373
Microb Cell Fact. 2009 Jun 02;8:29
pubmed: 19490607
Nat Commun. 2013;4:2741
pubmed: 24225580
Nucleic Acids Res. 2016 Feb 29;44(4):e32
pubmed: 26467480
Science. 1993 May 7;260(5109):778-83
pubmed: 7683443
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W264-70
pubmed: 24728994
Science. 2017 Jul 14;357(6347):168-175
pubmed: 28706065
Cell. 1993 Nov 19;75(4):717-28
pubmed: 7902213
Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27
pubmed: 20373503
Biochim Biophys Acta. 2013 Aug;1834(8):1671-80
pubmed: 23732563
Protein Sci. 1998 Feb;7(2):233-42
pubmed: 9521098
Appl Environ Microbiol. 2007 Feb;73(4):1189-98
pubmed: 17189442
Science. 1974 Sep 6;185(4154):862-4
pubmed: 4843792
Nat Protoc. 2006;1(2):755-68
pubmed: 17406305
Nat Methods. 2005 Jul;2(7):507-9
pubmed: 15973420
Curr Top Microbiol Immunol. 2005;300:41-56
pubmed: 16573236
Science. 2014 Nov 7;346(6210):1257521
pubmed: 25378630
FASEB J. 2000 Feb;14(2):231-41
pubmed: 10657980
Curr Protoc Bioinformatics. 2014 Sep 08;47:11.12.1-34
pubmed: 25199790
PLoS One. 2014 Nov 03;9(11):e111800
pubmed: 25364902
J Struct Biol. 2011 Aug;175(2):189-97
pubmed: 21515383
Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98
pubmed: 25897122
Nat Biotechnol. 2000 Jul;18(7):754-9
pubmed: 10888844
BMC Genomics. 2007 Oct 09;8:363
pubmed: 17925018
Drug Discov Today. 2007 Nov;12(21-22):931-8
pubmed: 17993411
Mol Cell Proteomics. 2012 Mar;11(3):M111.014050
pubmed: 22278370
Nature. 2016 Jan 21;529(7586):358-363
pubmed: 26760206
Bioinformatics. 2017 Sep 15;33(18):2938-2940
pubmed: 28645171
Nat Cell Biol. 2011 Nov 27;14(1):93-105
pubmed: 22119785
BMC Genomics. 2011 Jun 15;12 Suppl 1:S5
pubmed: 21810207
Mol Cell Proteomics. 2016 Apr;15(4):1232-45
pubmed: 26729710
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Appl Microbiol Biotechnol. 2014 Jun;98(12):5301-17
pubmed: 24743983
Nucleic Acids Res. 2004 Feb 18;32(3):e37
pubmed: 14973331
Biomol Eng. 2005 Jun;22(1-3):57-61
pubmed: 15857784
Genome Res. 2014 Dec;24(12):2011-21
pubmed: 25294246
Curr Opin Biotechnol. 1995 Oct;6(5):501-6
pubmed: 7579661
J Mol Biol. 2010 Nov 5;403(4):562-77
pubmed: 20850457
Nat Biotechnol. 2012 May 27;30(6):543-8
pubmed: 22634563
Cell. 2013 Feb 28;152(5):1134-45
pubmed: 23452858
Genetics. 2013 Feb;193(2):383-410
pubmed: 23396477
Nature. 1991 Oct 24;353(6346):726-30
pubmed: 1834945
J Cell Biol. 1996 Jul;134(2):269-78
pubmed: 8707814
Bioinformatics. 2017 Nov 01;33(21):3387-3395
pubmed: 29036616
Biotechniques. 2004 Jan;36(1):152-4
pubmed: 14740498
Nat Methods. 2013 Oct;10(10):999-1002
pubmed: 23995388
PLoS One. 2013 May 07;8(5):e63284
pubmed: 23667601
J Microbiol Biotechnol. 2015 Apr;25(4):547-53
pubmed: 25381740