Robbin Bouwmeester

Affiliations

VIB-UGent Center for Medical Biotechnology, VIB , Ghent , Belgium.
Department of Biomolecular Medicine , Ghent University , Ghent , Belgium.

ORCID: 0000-0001-6807-7029

Publications (13)

Comprehensive and Empirical Evaluation of Machine Learning Algorithms for Small Molecule LC Retention Time Prediction.

Analytical chemistry

Avec: Robbin Bouwmeester , Lennart Martens , Sven Degroeve

The Age of Data-Driven Proteomics: How Machine Learning Enables Novel Workflows.

Proteomics

Avec: Robbin Bouwmeester , Ralf Gabriels , Tim Van Den Bossche , Lennart Martens , Sven Degroeve

Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients.

JACS Au

Avec: Bart Van Puyvelde , Katleen Van Uytfanghe , Olivier Tytgat , Laurence Van Oudenhove , Ralf Gabriels , Robbin Bouwmeester , Simon Daled , Tim Van Den Bossche , Pathmanaban Ramasamy , Sigrid Verhelst , Laura De Clerck , Laura Corveleyn , Sander Willems , Nathan Debunne , Evelien Wynendaele , Bart De Spiegeleer , Peter Judak , Kris Roels , Laurie De Wilde , Peter Van Eenoo , Tim Reyns , Marc Cherlet , Emmie Dumont , Griet Debyser , Ruben t'Kindt , Koen Sandra , Surya Gupta , Nicolas Drouin , Amy Harms , Thomas Hankemeier , Donald J L Jones , Pankaj Gupta , Dan Lane , Catherine S Lane , Said El Ouadi , Jean-Baptiste Vincendet , Nick Morrice , Stuart Oehrle , Nikunj Tanna , Steve Silvester , Sally Hannam , Florian C Sigloch , Andrea Bhangu-Uhlmann , Jan Claereboudt , N Leigh Anderson , Morteza Razavi , Sven Degroeve , Lize Cuypers , Christophe Stove , Katrien Lagrou , Geert A Martens , Dieter Deforce , Lennart Martens , Johannes P C Vissers , Maarten Dhaenens

Outcome of atypical haemolytic uraemic syndrome relapse after eculizumab withdrawal.

Clinical kidney journal

Avec: Caroline Duineveld , Romy Bouwmeester , Joost W van der Heijden , Stefan P Berger , Nicole C A J van de Kar , Jack F M Wetzels , Auteur inconnu

Benefit of In Silico Predicted Spectral Libraries in Data-Independent Acquisition Data Analysis Workflows.

Journal of proteome research

Avec: An Staes , Teresa Mendes Maia , Sara Dufour , Robbin Bouwmeester , Ralf Gabriels , Lennart Martens , Kris Gevaert , Francis Impens , Simon Devos

ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.

Journal of proteome research

Avec: Tobias G Rehfeldt , Ralf Gabriels , Robbin Bouwmeester , Siegfried Gessulat , Benjamin A Neely , Magnus Palmblad , Yasset Perez-Riverol , Tobias Schmidt , Juan Antonio Vizcaíno , Eric W Deutsch

Updated MS²PIP web server supports cutting-edge proteomics applications.

Nucleic acids research

Avec: Arthur Declercq , Robbin Bouwmeester , Cristina Chiva , Eduard Sabidó , Aurélie Hirschler , Christine Carapito , Lennart Martens , Sven Degroeve , Ralf Gabriels

The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions.

Microbial cell factories

Avec: Myrsini Sakarika , Frederiek-Maarten Kerckhof , Lotte Van Peteghem , Alexandra Pereira , Tim Van Den Bossche , Robbin Bouwmeester , Ralf Gabriels , Delphi Van Haver , Barbara Ulčar , Lennart Martens , Francis Impens , Nico Boon , Ramon Ganigué , Korneel Rabaey

Intensity and retention time prediction improves the rescoring of protein-nucleic acid cross-links.

Proteomics

Avec: Arslan Siraj , Robbin Bouwmeester , Arthur Declercq , Luisa Welp , Aleksandar Chernev , Alexander Wulf , Henning Urlaub , Lennart Martens , Sven Degroeve , Oliver Kohlbacher , Timo Sachsenberg

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit.

Nature communications

Avec: Morgane Boone , Pathmanaban Ramasamy , Jasper Zuallaert , Robbin Bouwmeester , Berre Van Moer , Davy Maddelein , Demet Turan , Niels Hulstaert , Hannah Eeckhaut , Elien Vandermarliere , Lennart Martens , Sven Degroeve , Wesley De Neve , Wim Vranken , Nico Callewaert

DeepLC can predict retention times for peptides that carry as-yet unseen modifications.

Nature methods

Avec: Robbin Bouwmeester , Ralf Gabriels , Niels Hulstaert , Lennart Martens , Sven Degroeve

Personalized Proteome: Comparing Proteogenomics and Open Variant Search Approaches for Single Amino Acid Variant Detection.

Journal of proteome research

Avec: Renee Salz , Robbin Bouwmeester , Ralf Gabriels , Sven Degroeve , Lennart Martens , Pieter-Jan Volders , Peter A C 't Hoen

MS

Journal of proteome research

Avec: Louise M Buur , Arthur Declercq , Marina Strobl , Robbin Bouwmeester , Sven Degroeve , Lennart Martens , Viktoria Dorfer , Ralf Gabriels

Réseau de co-auteurs

Lennart Martens 11 collaborations

Sven Degroeve 9 collaborations

Ralf Gabriels 9 collaborations

Tim Van Den Bossche 3 collaborations

Arthur Declercq 3 collaborations

Pathmanaban Ramasamy 2 collaborations

Francis Impens 2 collaborations

Niels Hulstaert 2 collaborations

Bart Van Puyvelde 1 collaboration

Katleen Van Uytfanghe 1 collaboration

Olivier Tytgat 1 collaboration

Laurence Van Oudenhove 1 collaboration

Simon Daled 1 collaboration

Sigrid Verhelst 1 collaboration

Laura De Clerck 1 collaboration

Laura Corveleyn 1 collaboration

Sander Willems 1 collaboration

Nathan Debunne 1 collaboration

Evelien Wynendaele 1 collaboration

Bart De Spiegeleer 1 collaboration

Peter Judak 1 collaboration

Kris Roels 1 collaboration

Laurie De Wilde 1 collaboration

Peter Van Eenoo 1 collaboration

Tim Reyns 1 collaboration

Marc Cherlet 1 collaboration

Emmie Dumont 1 collaboration

Griet Debyser 1 collaboration

Ruben t'Kindt 1 collaboration

Koen Sandra 1 collaboration

Surya Gupta 1 collaboration

Nicolas Drouin 1 collaboration

Amy Harms 1 collaboration

Thomas Hankemeier 1 collaboration

Donald J L Jones 1 collaboration

Pankaj Gupta 1 collaboration

Dan Lane 1 collaboration

Catherine S Lane 1 collaboration

Said El Ouadi 1 collaboration

Jean-Baptiste Vincendet 1 collaboration

Nick Morrice 1 collaboration

Stuart Oehrle 1 collaboration

Nikunj Tanna 1 collaboration

Steve Silvester 1 collaboration

Sally Hannam 1 collaboration

Florian C Sigloch 1 collaboration

Andrea Bhangu-Uhlmann 1 collaboration

Jan Claereboudt 1 collaboration

N Leigh Anderson 1 collaboration

Morteza Razavi 1 collaboration

Lize Cuypers 1 collaboration

Christophe Stove 1 collaboration

Katrien Lagrou 1 collaboration

Geert A Martens 1 collaboration

Dieter Deforce 1 collaboration

Johannes P C Vissers 1 collaboration

Maarten Dhaenens 1 collaboration

Caroline Duineveld 1 collaboration

Romy Bouwmeester 1 collaboration

Joost W van der Heijden 1 collaboration

Stefan P Berger 1 collaboration

Nicole C A J van de Kar 1 collaboration

Jack F M Wetzels 1 collaboration

None None 1 collaboration

An Staes 1 collaboration

Teresa Mendes Maia 1 collaboration

Sara Dufour 1 collaboration

Kris Gevaert 1 collaboration

Simon Devos 1 collaboration

Tobias G Rehfeldt 1 collaboration

Siegfried Gessulat 1 collaboration

Benjamin A Neely 1 collaboration

Magnus Palmblad 1 collaboration

Yasset Perez-Riverol 1 collaboration

Tobias Schmidt 1 collaboration

Juan Antonio Vizcaíno 1 collaboration

Eric W Deutsch 1 collaboration

Cristina Chiva 1 collaboration

Eduard Sabidó 1 collaboration

Aurélie Hirschler 1 collaboration

Christine Carapito 1 collaboration

Myrsini Sakarika 1 collaboration

Frederiek-Maarten Kerckhof 1 collaboration

Lotte Van Peteghem 1 collaboration

Alexandra Pereira 1 collaboration

Delphi Van Haver 1 collaboration

Barbara Ulčar 1 collaboration

Nico Boon 1 collaboration

Ramon Ganigué 1 collaboration

Korneel Rabaey 1 collaboration

Arslan Siraj 1 collaboration

Luisa Welp 1 collaboration

Aleksandar Chernev 1 collaboration

Alexander Wulf 1 collaboration

Henning Urlaub 1 collaboration

Oliver Kohlbacher 1 collaboration

Timo Sachsenberg 1 collaboration

Morgane Boone 1 collaboration

Jasper Zuallaert 1 collaboration

Berre Van Moer 1 collaboration

Davy Maddelein 1 collaboration

Demet Turan 1 collaboration

Hannah Eeckhaut 1 collaboration

Elien Vandermarliere 1 collaboration

Wesley De Neve 1 collaboration

Wim Vranken 1 collaboration

Nico Callewaert 1 collaboration

Renee Salz 1 collaboration

Pieter-Jan Volders 1 collaboration

Peter A C 't Hoen 1 collaboration

Louise M Buur 1 collaboration

Marina Strobl 1 collaboration

Viktoria Dorfer 1 collaboration