Perspective on taxonomic classification of uncultivated viruses.

Animals Evolution, Molecular Humans Metagenomics Phylogeny Viruses / classification

Journal

Current opinion in virology
ISSN: 1879-6265
Titre abrégé: Curr Opin Virol
Pays: Netherlands
ID NLM: 101560941

Informations de publication

Date de publication:
12 2021
Historique:
received: 02 08 2021
revised: 26 10 2021
accepted: 27 10 2021
pubmed: 16 11 2021
medline: 3 2 2022
entrez: 15 11 2021
Statut: ppublish

Résumé

Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries.

Identifiants

DOI: 10.1016/j.coviro.2021.10.011 PMID: 34781105
pubmed: 34781105
pii: S1879-6257(21)00133-4
doi: 10.1016/j.coviro.2021.10.011
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

207-215

Subventions

Organisme : NIAID NIH HHS
ID : HHSN272201800013C
Pays : United States
Organisme : NIAID NIH HHS
ID : HHSN272201800013C
Pays : United States
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/R012490/1
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBS/E/F/000PR10353
Pays : United Kingdom
Organisme : Biotechnology and Biological Sciences Research Council
ID : BBS/E/F/000PR10356
Pays : United Kingdom
Organisme : NIDDK NIH HHS
ID : RC2 DK116713
Pays : United States

Informations de copyright

Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.

Auteurs

Bas E Dutilh (BE)

Theoretical Biology and Bioinformatics, Science for Life, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands; Institute of Bioloversity, Faculty of Biological Sciences, Cluster of Excellence Balance of the Microverse, Friedrich-Schiller-University Jena, 07743, Jena, Germany. Electronic address: bedutilh@gmail.com.

Arvind Varsani (A)

The Biodesign Center of Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85287, USA; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, 7925, Cape Town, South Africa.

Yigang Tong (Y)

Beijing Advanced Innovation Centre for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.

Peter Simmonds (P)

Nuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford, OX1 3SY, UK.

Sead Sabanadzovic (S)

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, MS 39762, USA.

Luisa Rubino (L)

Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche, Bari, Italy.

Simon Roux (S)

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Alejandro Reyes Muñoz (AR)

Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.

Cédric Lood (C)

Department of Microbial and Molecular Systems, KU Leuven, Kasteelpark Arenberg 23, 3001, Leuven, Belgium; Department of Biosystems, KU Leuven, Willem de Croylaan 42, 3001, Leuven, Belgium.

Elliot J Lefkowitz (EJ)

Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

Jens H Kuhn (JH)

Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA.

Mart Krupovic (M)

Institut Pasteur, Université de Paris, Archaeal Virology Unit, F-75015, Paris, France.

Robert A Edwards (RA)

College of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia.

J Rodney Brister (JR)

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA.

Evelien M Adriaenssens (EM)

Quadram Institute Bioscience, Norwich Research Park, NR4 7UQ, Norwich, UK.

Matthew B Sullivan (MB)

Departments of Microbiology and Civil, Environmental, and Geodetic Engineering, Ohio State University, Columbus, OH, USA.

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Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Perspective on taxonomic classification of...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Évolution moléculaire › Perspective on taxonomic classification of...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Hominidae › Humains › Perspective on taxonomic classification of...
questionsmedicales.fr › Disciplines des sciences naturelles › Disciplines des sciences biologiques › Biologie › Génétique › Génomique › Métagénomique › Perspective on taxonomic classification of...
questionsmedicales.fr › Sciences de l'information › Phylogenèse › Perspective on taxonomic classification of...
questionsmedicales.fr › Virus › Perspective on taxonomic classification of...