Clinical Impact of Molecular Subtyping of Pancreatic Cancer.

ESPAC clinical trials molecular subtypes next generation sequencing precision medicine structural variants transcriptomes

Journal

Frontiers in cell and developmental biology
ISSN: 2296-634X
Titre abrégé: Front Cell Dev Biol
Pays: Switzerland
ID NLM: 101630250

Informations de publication

Date de publication:
2021
Historique:
received: 19 07 2021
accepted: 17 09 2021
entrez: 22 11 2021
pubmed: 23 11 2021
medline: 23 11 2021
Statut: epublish

Résumé

Pancreatic ductal adenocarcinoma is a highly lethal malignancy, which has now become the seventh most common cause of cancer death in the world, with the highest mortality rates in Europe and North America. In the past 30 years, there has been some progress in 5-year survival (rates increasing from 2.5 to 10%), but this is still extremely poor compared to all other common cancer types. Targeted therapies for advanced pancreatic cancer based on actionable mutations have been disappointing, with only 3-5% showing even a short clinical benefit. There is, however, a molecular diversity beyond mutations in genes responsible for producing classical canonical signaling pathways. Pancreatic cancer is almost unique in promoting an excess production of other components of the stroma, resulting in a complex tumor microenvironment that contributes to tumor development, progression, and response to treatment. Various transcriptional subtypes have also been described. Most notably, there is a strong alignment between the Classical/Pancreatic progenitor and Quasi-mesenchymal/Basal-like/Squamous subtype signatures of Moffit, Collinson, Bailey, Puleo, and Chan-Seng-Yue, which have potential clinical impact. Sequencing of epithelial cell populations enriched by laser capture microscopy combined with single-cell RNA sequencing has revealed the potential genomic evolution of pancreatic cancer as being a consequence of a gene expression continuum from mixed Basal-like and Classical cell populations within the same tumor, linked to allelic imbalances in mutant KRAS, with metastatic tumors being more copy number-unstable compared to primary tumors. The Basal-like subtype appears more chemoresistant with reduced survival compared to the Classical subtype. Chemotherapy and/or chemoradiation will also enrich the Basal-like subtype. Squamous/Basal-like programs facilitate immune infiltration compared with the Classical-like programs. The immune infiltrates associated with Basal and Classical type cells are distinct, potentially opening the door to differential strategies. Single-cell and spatial transcriptomics will now allow single cell profiling of tumor and resident immune cell populations that may further advance subtyping. Multiple clinical trials have been launched based on transcriptomic response signatures and molecular subtyping including COMPASS, Precision Promise, ESPAC6/7, PREDICT-PACA, and PASS1. We review several approaches to explore the clinical relevance of molecular profiling to provide optimal bench-to-beside translation with clinical impact.

Identifiants

pubmed: 34805152
doi: 10.3389/fcell.2021.743908
pmc: PMC8603393
doi:

Types de publication

Journal Article Review

Langues

eng

Pagination

743908

Commentaires et corrections

Type : ErratumIn

Informations de copyright

Copyright © 2021 Xu, Hu, Bailey, Springfeld, Roth, Kurilov, Brors, Gress, Buchholz, An, Wei, Peccerella, Büchler, Hackert and Neoptolemos.

Déclaration de conflit d'intérêts

ZX is in receipt of funding from the Chinese Scholarship Council; PB declares grants from Horizon Europe 2020 (Marie Skłodowska Curie Innovative Training Network); SR declares grants from German Cancer Aid grants (70112720 and 70113167); JN declares grants from the Dietmar Hopp Stiftung GmbH, the Stiftung Deutsche Krebshilfe, and the Heidelberger Stiftung Chirurgie. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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Auteurs

Xu Zhou (X)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Kai Hu (K)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Peter Bailey (P)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.
Institute of Cancer Sciences, University of Glasgow, Glasgow, United Kingdom.

Christoph Springfeld (C)

Department of Medical Oncology, National Center for Tumor Diseases, Heidelberg University Hospital, Heidelberg, Germany.

Susanne Roth (S)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.

Roma Kurilov (R)

Division of Applied Bioinformatics, German Cancer Research Center, Heidelberg, Germany.

Benedikt Brors (B)

Department of Medical Oncology, National Center for Tumor Diseases, Heidelberg University Hospital, Heidelberg, Germany.
Division of Applied Bioinformatics, German Cancer Research Center, Heidelberg, Germany.

Thomas Gress (T)

Department of Gastroenterology and Endocrinology, Philipps University of Marburg, Marburg, Germany.

Malte Buchholz (M)

Department of Gastroenterology and Endocrinology, Philipps University of Marburg, Marburg, Germany.

Jingyu An (J)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Kongyuan Wei (K)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Teresa Peccerella (T)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Markus W Büchler (MW)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.

Thilo Hackert (T)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.

John P Neoptolemos (JP)

Department of General, Visceral and Transplantation Surgery, Heidelberg University Hospital, Heidelberg, Germany.
Section of Surgical Research, Heidelberg University Hospital, Heidelberg, Germany.

Classifications MeSH