The epitope arrangement on flavivirus particles contributes to Mab C10's extraordinary neutralization breadth across Zika and dengue viruses.
Animals
Antibodies, Monoclonal
/ immunology
Antibodies, Neutralizing
/ immunology
Antibodies, Viral
/ immunology
Cell Line
Chlorocebus aethiops
Cross Reactions
/ immunology
Dengue
/ immunology
Dengue Virus
/ immunology
Drosophila melanogaster
HEK293 Cells
Humans
Protein Binding
Protein Conformation
Vero Cells
Viral Envelope Proteins
/ chemistry
Zika Virus
/ immunology
Zika Virus Infection
/ immunology
Dengue virus
Flaviviruses
X-ray crystallography
Zika virus
broadly neutralizing antibodies
cryo-EM
vaccine design
Journal
Cell
ISSN: 1097-4172
Titre abrégé: Cell
Pays: United States
ID NLM: 0413066
Informations de publication
Date de publication:
09 12 2021
09 12 2021
Historique:
received:
22
09
2020
revised:
06
09
2021
accepted:
08
11
2021
pubmed:
2
12
2021
medline:
4
1
2022
entrez:
1
12
2021
Statut:
ppublish
Résumé
The human monoclonal antibody C10 exhibits extraordinary cross-reactivity, potently neutralizing Zika virus (ZIKV) and the four serotypes of dengue virus (DENV1-DENV4). Here we describe a comparative structure-function analysis of C10 bound to the envelope (E) protein dimers of the five viruses it neutralizes. We demonstrate that the C10 Fab has high affinity for ZIKV and DENV1 but not for DENV2, DENV3, and DENV4. We further show that the C10 interaction with the latter viruses requires an E protein conformational landscape that limits binding to only one of the three independent epitopes per virion. This limited affinity is nevertheless counterbalanced by the particle's icosahedral organization, which allows two different dimers to be reached by both Fab arms of a C10 immunoglobulin. The epitopes' geometric distribution thus confers C10 its exceptional neutralization breadth. Our results highlight the importance not only of paratope/epitope complementarity but also the topological distribution for epitope-focused vaccine design.
Identifiants
pubmed: 34852239
pii: S0092-8674(21)01325-8
doi: 10.1016/j.cell.2021.11.010
pmc: PMC8724787
pii:
doi:
Substances chimiques
Antibodies, Monoclonal
0
Antibodies, Neutralizing
0
Antibodies, Viral
0
Viral Envelope Proteins
0
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
6052-6066.e18Subventions
Organisme : Wellcome Trust
ID : 203224/Z/16/Z
Pays : United Kingdom
Organisme : NIAID NIH HHS
ID : R01 AI094386
Pays : United States
Organisme : NIH HHS
ID : S10 OD018111
Pays : United States
Organisme : NIGMS NIH HHS
ID : U24 GM116792
Pays : United States
Organisme : NIDCR NIH HHS
ID : R01 DE025567
Pays : United States
Organisme : NCRR NIH HHS
ID : S10 RR023057
Pays : United States
Organisme : Wellcome Trust
ID : 095541/A/11/Z
Pays : United Kingdom
Organisme : NIDCR NIH HHS
ID : R01 DE028583
Pays : United States
Commentaires et corrections
Type : CommentIn
Informations de copyright
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of interests F.A.R. is a board member and shareholder of EureKARE and MELETIUS Therapeutics. G.R.S. is member of the GSK Vaccines Scientific Advisory Board and a founding shareholder of RQ Biotechnology. G.R.S., F.A.R., P.G.-C., M.-C.V, A.R., S.D., and J.M. are authors in a patent concerning EDE mAbs, including C8 and C10:US20180037611A1 (2018): Anti-dengue vaccines and antibodies. G.R.S., F.A.R., M.-C.V., A.R., and J.M. are authors of patent CA3066488A1 (2017): Neutralising antibody against dengue for use in a method of prevention and/or treatment.
Références
Protein Sci. 2018 Jan;27(1):293-315
pubmed: 29067766
Cell. 2002 Mar 8;108(5):717-25
pubmed: 11893341
J Gen Virol. 1988 Jun;69 ( Pt 6):1391-8
pubmed: 3385407
Nature. 2013 Apr 25;496(7446):504-7
pubmed: 23563266
Nucleic Acids Res. 2003 Jul 1;31(13):3784-8
pubmed: 12824418
Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):6986-91
pubmed: 12759475
Microbiol Spectr. 2014 Dec;2(6):
pubmed: 26104444
Acta Crystallogr D Biol Crystallogr. 2009 Jun;65(Pt 6):582-601
pubmed: 19465773
Nat Methods. 2014 Jan;11(1):63-5
pubmed: 24213166
Nature. 2016 Aug 4;536(7614):48-53
pubmed: 27338953
PLoS Pathog. 2010 Oct 21;6(10):e1001157
pubmed: 20975939
Lancet. 2007 Nov 10;370(9599):1644-52
pubmed: 17993365
Emerg Microbes Infect. 2017 May 10;6(5):e33
pubmed: 28487557
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Cell Host Microbe. 2007 Apr 19;1(2):135-45
pubmed: 18005691
Cell Rep. 2018 Nov 6;25(6):1385-1394.e7
pubmed: 30403995
Antiviral Res. 2016 Apr;128:7-19
pubmed: 26794397
Nat Commun. 2016 Nov 24;7:13679
pubmed: 27882950
Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6795-9
pubmed: 23569243
Nature. 2015 Apr 2;520(7545):109-13
pubmed: 25581790
Vaccine. 2020 Jul 31;38(35):5572-5576
pubmed: 32654899
Nat Immunol. 2015 Feb;16(2):170-177
pubmed: 25501631
J Immunol. 2012 May 15;188(10):4971-9
pubmed: 22491255
Virology. 2000 Sep 1;274(2):292-308
pubmed: 10964773
J Virol. 2006 Dec;80(24):12149-59
pubmed: 17035317
Sci Immunol. 2017 Aug 18;2(14):
pubmed: 28821561
Genome Announc. 2016 Feb 11;4(1):
pubmed: 26868382
Science. 2003 Sep 5;301(5638):1374-7
pubmed: 12920303
J Virol. 2013 Jul;87(13):7585-92
pubmed: 23637405
Cell. 2017 May 04;169(4):597-609.e11
pubmed: 28475892
Virology. 2003 Feb 1;306(1):126-34
pubmed: 12620805
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):133-44
pubmed: 20124693
Clin Ther. 2017 Aug;39(8):1519-1536
pubmed: 28754189
J Gen Virol. 2017 Nov;98(11):2837-2849
pubmed: 29035172
EMBO J. 2012 Feb 1;31(3):767-79
pubmed: 22139356
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W111-5
pubmed: 15980437
J Struct Biol. 2000 Aug;131(2):126-34
pubmed: 11042083
Cell. 2021 Dec 9;184(25):6067-6080.e13
pubmed: 34852238
Sci Rep. 2016 May 17;6:26100
pubmed: 27185466
J Virol. 2005 Jan;79(2):1223-31
pubmed: 15613349
Structure. 2004 Sep;12(9):1607-18
pubmed: 15341726
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2210-21
pubmed: 15572774
Nat Commun. 2017 May 23;8:15411
pubmed: 28534525
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32
pubmed: 15572765
Nature. 2018 Aug;560(7720):573-581
pubmed: 30158602
Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1204-14
pubmed: 23793146
Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2487-99
pubmed: 25195761
Structure. 2018 Sep 4;26(9):1169-1177.e3
pubmed: 29958768
Lancet Infect Dis. 2019 Apr;19(4):439-446
pubmed: 30826189
Genome Announc. 2014 Jun 05;2(3):
pubmed: 24903869
Asian Pac J Trop Med. 2017 Jan;10(1):1-5
pubmed: 28107856
J Gen Virol. 2009 Oct;90(Pt 10):2457-2461
pubmed: 19587132
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
J Mol Biol. 2017 Feb 3;429(3):356-364
pubmed: 27561707
mBio. 2016 Jul 19;7(4):
pubmed: 27435464
Nucleic Acids Res. 2009 Jan;37(Database issue):D1006-12
pubmed: 18978023
Nat Commun. 2021 Jun 1;12(1):3266
pubmed: 34075032
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W320-4
pubmed: 24753421
J Struct Biol. 2012 Dec;180(3):519-30
pubmed: 23000701