Apoptolidin family glycomacrolides target leukemia through inhibition of ATP synthase.


Journal

Nature chemical biology
ISSN: 1552-4469
Titre abrégé: Nat Chem Biol
Pays: United States
ID NLM: 101231976

Informations de publication

Date de publication:
04 2022
Historique:
received: 17 05 2021
accepted: 17 09 2021
pubmed: 4 12 2021
medline: 5 4 2022
entrez: 3 12 2021
Statut: ppublish

Résumé

Cancer cells have long been recognized to exhibit unique bioenergetic requirements. The apoptolidin family of glycomacrolides are distinguished by their selective cytotoxicity towards oncogene-transformed cells, yet their molecular mechanism remains uncertain. We used photoaffinity analogs of the apoptolidins to identify the F

Identifiants

pubmed: 34857958
doi: 10.1038/s41589-021-00900-9
pii: 10.1038/s41589-021-00900-9
pmc: PMC8967781
mid: NIHMS1741422
doi:

Substances chimiques

Macrolides 0
Adenosine Triphosphate 8L70Q75FXE
Mitochondrial Proton-Translocating ATPases EC 3.6.3.-
apoptolidin SAO6WVQ23I

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

360-367

Subventions

Organisme : NCI NIH HHS
ID : R01 CA226833
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM133552
Pays : United States
Organisme : NHLBI NIH HHS
ID : L30 HL139435
Pays : United States
Organisme : NCI NIH HHS
ID : F30 CA247202
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007347
Pays : United States
Organisme : NIDDK NIH HHS
ID : P30 DK020593
Pays : United States
Organisme : NCI NIH HHS
ID : F30 CA236131
Pays : United States
Organisme : NCI NIH HHS
ID : P30 CA068485
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM065086
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM092218
Pays : United States
Organisme : NCRR NIH HHS
ID : UL1 RR024975
Pays : United States
Organisme : CIHR
ID : PJT162186
Pays : Canada
Organisme : NCRR NIH HHS
ID : S10 RR019022
Pays : United States
Organisme : NHLBI NIH HHS
ID : K23 HL138291
Pays : United States

Commentaires et corrections

Type : CommentIn

Informations de copyright

© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

Références

Akimov, Y. & Aittokallio, T. Re-defining synthetic lethality by phenotypic profiling for precision oncology. Cell Chem. Biol. 28, 246–256 (2021).
pubmed: 33631125 doi: 10.1016/j.chembiol.2021.01.026
Pavlova, N. N. & Thompson, C. B. The emerging hallmarks of cancer metabolism. Cell Metab. 23, 27–47 (2016).
pubmed: 26771115 pmcid: 4715268 doi: 10.1016/j.cmet.2015.12.006
Hanahan, D. & Weinberg, R. A. Hallmarks of cancer: the next generation. Cell 144, 646–674 (2011).
pubmed: 21376230 doi: 10.1016/j.cell.2011.02.013
DeBerardinis, R. J. & Chandel, N. S. We need to talk about the Warburg effect. Nat. Metab. 2, 127–129 (2020).
pubmed: 32694689 doi: 10.1038/s42255-020-0172-2
Xu, Y., Xue, D., Bankhead, A. 3rd & Neamati, N. Why all the fuss about oxidative phosphorylation (OXPHOS)? J. Med. Chem. 63, 14276–14307 (2020).
pubmed: 33103432 doi: 10.1021/acs.jmedchem.0c01013
Martinez-Reyes, I. et al. Mitochondrial ubiquinol oxidation is necessary for tumour growth. Nature 585, 288–292 (2020).
pubmed: 32641834 pmcid: 7486261 doi: 10.1038/s41586-020-2475-6
Jones, C. L., Inguva, A. & Jordan, C. T. Targeting energy metabolism in cancer stem cells: progress and challenges in leukemia and solid tumors. Cell Stem Cell 28, 378–393 (2021).
pubmed: 33667359 pmcid: 7951949 doi: 10.1016/j.stem.2021.02.013
Carter, J. L. et al. Targeting mitochondrial respiration for the treatment of acute myeloid leukemia. Biochem. Pharmacol. 182, 114253 (2020).
pubmed: 33011159 pmcid: 8073742 doi: 10.1016/j.bcp.2020.114253
Lagadinou, E. D. et al. BCL-2 inhibition targets oxidative phosphorylation and selectively eradicates quiescent human leukemia stem cells. Cell Stem Cell 12, 329–341 (2013).
pubmed: 23333149 pmcid: 3595363 doi: 10.1016/j.stem.2012.12.013
Pei, S. et al. Monocytic subclones confer resistance to venetoclax-based therapy in patients with acute myeloid leukemia. Cancer Discov. 10, 536–551 (2020).
pubmed: 31974170 pmcid: 7124979 doi: 10.1158/2159-8290.CD-19-0710
Sighel, D. et al. Inhibition of mitochondrial translation suppresses glioblastoma stem cell growth. Cell Rep. 35, 109024 (2021).
pubmed: 33910005 pmcid: 8097689 doi: 10.1016/j.celrep.2021.109024
Wang, F. et al. Targeted inhibition of mutant IDH2 in leukemia cells induces cellular differentiation. Science 340, 622–626 (2013).
pubmed: 23558173 doi: 10.1126/science.1234769
Faubert, B., Solmonson, A. & Deberardinis, R. J. Metabolic reprogramming and cancer progression. Science 368, eaaw5473 (2020).
pubmed: 32273439 pmcid: 7227780 doi: 10.1126/science.aaw5473
Kim, J. W., Adachi, H., Shin-ya, K., Hayakawa, Y. & Seto, H. Apoptolidin, a new apoptosis inducer in transformed cells from Nocardiopsis sp. J. Antibiot. (Tokyo) 50, 628–630 (1997).
doi: 10.7164/antibiotics.50.628
Murakami, R. et al. Ammocidin, a new apoptosis inducer in Ras-dependent cells from Saccharothrix sp. I. Production, isolation and biological activity. J. Antibiot. (Tokyo) 54, 710–713 (2001).
doi: 10.7164/antibiotics.54.710
Salomon, A. R., Voehringer, D. W., Herzenberg, L. A. & Khosla, C. Apoptolidin, a selective cytotoxic agent, is an inhibitor of F
pubmed: 11182320 doi: 10.1016/S1074-5521(00)00057-0
Wender, P. A. et al. Correlation of F
pubmed: 16468718 pmcid: 2533578 doi: 10.1021/ol052800q
Serrill, J. D. et al. Apoptolidins A and C activate AMPK in metabolically sensitive cell types and are mechanistically distinct from oligomycin A. Biochem. Pharmacol. 93, 251–265 (2015).
pubmed: 25511868 doi: 10.1016/j.bcp.2014.11.015
DeGuire, S. M. et al. Fluorescent probes of the apoptolidins and their utility in cellular localization studies. Angew. Chem. Int. Ed. 54, 961–964 (2015).
doi: 10.1002/anie.201408906
Mackinnon, A. L. & Taunton, J. Target identification by diazirine photo-cross-linking and click chemistry. Curr. Protoc. Chem. Biol. 1, 55–73 (2009).
pubmed: 23667793 pmcid: 3647699 doi: 10.1002/9780470559277.ch090167
Du, Y. et al. Biosynthesis of the apoptolidins in Nocardiopsis sp. FU 40. Tetrahedron 67, 6568–6575 (2011).
pubmed: 21869849 pmcid: 3159176 doi: 10.1016/j.tet.2011.05.106
Salomon, A. R., Voehringer, D. W., Herzenberg, L. A. & Khosla, C. Understanding and exploiting the mechanistic basis for selectivity of polyketide inhibitors of F
pubmed: 11121076 pmcid: 18993 doi: 10.1073/pnas.97.26.14766
Wender, P. A., Jankowski, O. D., Tabet, E. A. & Seto, H. Toward a structure–activity relationship for apoptolidin: selective functionalization of the hydroxyl group array. Org. Lett. 5, 487–490 (2003).
pubmed: 12583750 doi: 10.1021/ol027366w
Abrahams, J. P., Leslie, A. G., Lutter, R. & Walker, J. E. Structure at 2.8 A resolution of F
pubmed: 8065448 doi: 10.1038/370621a0
Guo, H. & Rubinstein, J. L. Cryo-EM of ATP synthases. Curr. Opin. Struct. Biol. 52, 71–79 (2018).
pubmed: 30240940 doi: 10.1016/j.sbi.2018.08.005
West, A. V. et al. Labeling preferences of diazirines with protein biomolecules. J. Am. Chem. Soc. 143, 6691–6700 (2021).
pubmed: 33876925 doi: 10.1021/jacs.1c02509
Salomon, A. R., Zhang, Y., Seto, H. & Khosla, C. Structure–activity relationships within a family of selectively cytotoxic macrolide natural products. Org. Lett. 3, 57–59 (2001).
pubmed: 11429871 doi: 10.1021/ol006767d
Gledhill, J. R. & Walker, J. E. Inhibitors of the catalytic domain of mitochondrial ATP synthase. Biochem. Soc. Trans. 34, 989–992 (2006).
pubmed: 17052243 doi: 10.1042/BST0340989
Symersky, J., Osowski, D., Walters, D. E. & Mueller, D. M. Oligomycin frames a common drug-binding site in the ATP synthase. Proc. Natl Acad. Sci. USA 109, 13961–13965 (2012).
pubmed: 22869738 pmcid: 3435195 doi: 10.1073/pnas.1207912109
Tantama, M., Martinez-Francois, J. R., Mongeon, R. & Yellen, G. Imaging energy status in live cells with a fluorescent biosensor of the intracellular ATP-to-ADP ratio. Nat. Commun. 4, 2550 (2013).
pubmed: 24096541 doi: 10.1038/ncomms3550
Gledhill, J. R., Montgomery, M. G., Leslie, A. G. & Walker, J. E. How the regulatory protein, IF
pubmed: 17895376 pmcid: 1994141 doi: 10.1073/pnas.0707326104
Ran, F. A. et al. Genome engineering using the CRISPR–Cas9 system. Nat. Protoc. 8, 2281–2308 (2013).
pubmed: 24157548 pmcid: 3969860 doi: 10.1038/nprot.2013.143
Matreyek, K. A., Stephany, J. J., Chiasson, M. A., Hasle, N. & Fowler, D. M. An improved platform for functional assessment of large protein libraries in mammalian cells. Nucleic Acids Res. 48, e1 (2020).
pubmed: 31612958
Wrenbeck, E. E. et al. Plasmid-based one-pot saturation mutagenesis. Nat. Methods 13, 928–930 (2016).
pubmed: 27723752 pmcid: 5666567 doi: 10.1038/nmeth.4029
Smith, R. M. Biological and chemical studies on a new antibiotic, oligomycin, University of Wisconsin–Madison, (1953).
Pennington, J. D., Williams, H. J., Salomon, A. R. & Sulikowski, G. A. Toward a stable apoptolidin derivative: identification of isoapoptolidin and selective deglycosylation of apoptolidin. Org. Lett. 4, 3823–3825 (2002).
pubmed: 12599468 doi: 10.1021/ol026829v
Ramsey, H. E. et al. A novel MCL1 inhibitor combined with venetoclax rescues venetoclax-resistant acute myelogenous leukemia. Cancer Discov. 8, 1566–1581 (2018).
pubmed: 30185627 pmcid: 6279595 doi: 10.1158/2159-8290.CD-18-0140
Baccelli, I. et al. Mubritinib targets the electron transport chain complex I and reveals the landscape of OXPHOS dependency in acute myeloid leukemia. Cancer Cell 36, 84–99.e8 (2019).
pubmed: 31287994 doi: 10.1016/j.ccell.2019.06.003
Jones, C. L. et al. Inhibition of amino acid metabolism selectively targets human leukemia stem cells. Cancer Cell 34, 724–740.e4 (2018).
pubmed: 30423294 pmcid: 6280965 doi: 10.1016/j.ccell.2018.10.005
Pollyea, D. A. et al. Venetoclax with azacitidine disrupts energy metabolism and targets leukemia stem cells in patients with acute myeloid leukemia. Nat. Med. 24, 1859–1866 (2018).
pubmed: 30420752 pmcid: 7001730 doi: 10.1038/s41591-018-0233-1
Sriskanthadevan, S. et al. AML cells have low spare reserve capacity in their respiratory chain that renders them susceptible to oxidative metabolic stress. Blood 125, 2120–2130 (2015).
pubmed: 25631767 pmcid: 4375109 doi: 10.1182/blood-2014-08-594408
Farge, T. et al. Chemotherapy-resistant human acute myeloid leukemia cells are not enriched for leukemic stem cells but require oxidative metabolism. Cancer Discov. 7, 716–735 (2017).
pubmed: 28416471 pmcid: 5501738 doi: 10.1158/2159-8290.CD-16-0441
Ashton, T. M., McKenna, W. G., Kunz-Schughart, L. A. & Higgins, G. S. Oxidative phosphorylation as an emerging target in cancer therapy. Clin. Cancer Res. 24, 2482–2490 (2018).
pubmed: 29420223 doi: 10.1158/1078-0432.CCR-17-3070
Molina, J. R. et al. An inhibitor of oxidative phosphorylation exploits cancer vulnerability. Nat. Med. 24, 1036–1046 (2018).
pubmed: 29892070 doi: 10.1038/s41591-018-0052-4
Sharon, D. et al. Inhibition of mitochondrial translation overcomes venetoclax resistance in AML through activation of the integrated stress response. Sci. Transl. Med. 11, eaax2863 (2019).
pubmed: 31666400 doi: 10.1126/scitranslmed.aax2863
Guieze, R. et al. Mitochondrial reprogramming underlies resistance to BCL-2 inhibition in lymphoid malignancies. Cancer Cell 36, 369–384 e13 (2019).
pubmed: 31543463 pmcid: 6801112 doi: 10.1016/j.ccell.2019.08.005
Gorelick, A. N. et al. Respiratory complex and tissue lineage drive recurrent mutations in tumour mtDNA. Nat. Metab. 3, 558–570 (2021).
pubmed: 33833465 doi: 10.1038/s42255-021-00378-8
Arrowsmith, C. H. et al. The promise and peril of chemical probes. Nat. Chem. Biol. 11, 536–541 (2015).
pubmed: 26196764 pmcid: 4706458 doi: 10.1038/nchembio.1867
Moulton, M. J. & Letsou, A. Modeling congenital disease and inborn errors of development in Drosophila melanogaster. Dis. Model. Mech. 9, 253–269 (2016).
pubmed: 26935104 pmcid: 4826979 doi: 10.1242/dmm.023564
Mueller, D. M. et al. Ni-chelate-affinity purification and crystallization of the yeast mitochondrial F
pubmed: 15358374 doi: 10.1016/j.pep.2004.06.035
Rubinstein, J. L., Dickson, V. K., Runswick, M. J. & Walker, J. E. ATP synthase from Saccharomyces cerevisiae: location of subunit h in the peripheral stalk region. J. Mol. Biol. 345, 513–520 (2005).
pubmed: 15581895 doi: 10.1016/j.jmb.2004.10.060
Marr, C. R., Benlekbir, S. & Rubinstein, J. L. Fabrication of carbon films with approximately 500 nm holes for cryo-EM with a direct detector device. J. Struct. Biol. 185, 42–47 (2014).
pubmed: 24269484 doi: 10.1016/j.jsb.2013.11.002
Tivol, W. F., Briegel, A. & Jensen, G. J. An improved cryogen for plunge freezing. Microsc. Microanal. 14, 375–379 (2008).
pubmed: 18793481 pmcid: 3058946 doi: 10.1017/S1431927608080781
Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017).
pubmed: 28165473 doi: 10.1038/nmeth.4169
Zheng, S. Q. et al. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nat. Methods 14, 331–332 (2017).
pubmed: 28250466 pmcid: 5494038 doi: 10.1038/nmeth.4193
Punjani, A., Zhang, H. & Fleet, D. J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nat. Methods 17, 1214–1221 (2020).
pubmed: 33257830 doi: 10.1038/s41592-020-00990-8
Medina-Cucurella, A. V. et al. User-defined single pot mutagenesis using unamplified oligo pools. Protein Eng. Des. Sel. 32, 41–45 (2019).
pubmed: 31297523 pmcid: 7212264 doi: 10.1093/protein/gzz013
Boyce, J. H., Reisman, B. J., Bachmann, B. O. & Porco, J. A. Jr. Synthesis and multiplexed activity profiling of synthetic acylphloroglucinol scaffolds. Angew. Chem. Int. Ed. 60, 1263–1272 (2021).
doi: 10.1002/anie.202010338
Baldwin, C. Biological and chemical properties of aurovertin, a metabolic product of Calcarisporium abuscula. Lloydia 27, 88–95 (1964).
Krasnoff, S. B. & Gupta, S. Identification and directed biosynthesis of efrapeptins in the fungus Tolypocladium geodes Gams (Deuteromycotina: Hyphomycetes). J. Chem. Ecol. 17, 1953–1962 (1991).
pubmed: 24258490 doi: 10.1007/BF00992580

Auteurs

Benjamin J Reisman (BJ)

Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
Medical Scientist Training Program, Vanderbilt University, Nashville, TN, USA.

Hui Guo (H)

Molecular Medicine Program, The Hospital for Sick Children, Toronto, Ontario, Canada.
Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.

Haley E Ramsey (HE)

Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.

Madison T Wright (MT)

Department of Chemistry, Vanderbilt University, Nashville, TN, USA.

Bradley I Reinfeld (BI)

Medical Scientist Training Program, Vanderbilt University, Nashville, TN, USA.
Cancer Biology Program, Vanderbilt University, Nashville, TN, USA.

P Brent Ferrell (PB)

Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Cancer Biology Program, Vanderbilt University, Nashville, TN, USA.

Gary A Sulikowski (GA)

Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, TN, USA.

W Kimryn Rathmell (WK)

Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Cancer Biology Program, Vanderbilt University, Nashville, TN, USA.

Michael R Savona (MR)

Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Cancer Biology Program, Vanderbilt University, Nashville, TN, USA.

Lars Plate (L)

Department of Chemistry, Vanderbilt University, Nashville, TN, USA.
Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, TN, USA.
Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.

John L Rubinstein (JL)

Molecular Medicine Program, The Hospital for Sick Children, Toronto, Ontario, Canada.
Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.
Department of Biochemistry, University of Toronto, Toronto, Ontario, Canada.

Brian O Bachmann (BO)

Department of Chemistry, Vanderbilt University, Nashville, TN, USA. brian.bachmann@vanderbilt.edu.
Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, TN, USA. brian.bachmann@vanderbilt.edu.

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