A compact review of molecular property prediction with graph neural networks.

AI Computational chemistry Deep-learning Drug discovery Graph neural-networks Molecular property Molecular representation Neural-networks

Journal

Drug discovery today. Technologies
ISSN: 1740-6749
Titre abrégé: Drug Discov Today Technol
Pays: England
ID NLM: 101235076

Informations de publication

Date de publication:
Dec 2020
Historique:
received: 08 07 2020
revised: 25 11 2020
accepted: 30 11 2020
entrez: 13 12 2021
pubmed: 14 12 2021
medline: 15 12 2021
Statut: ppublish

Résumé

As graph neural networks are becoming more and more powerful and useful in the field of drug discovery, many pharmaceutical companies are getting interested in utilizing these methods for their own in-house frameworks. This is especially compelling for tasks such as the prediction of molecular properties which is often one of the most crucial tasks in computer-aided drug discovery workflows. The immense hype surrounding these kinds of algorithms has led to the development of many different types of promising architectures and in this review we try to structure this highly dynamic field of AI-research by collecting and classifying 80 GNNs that have been used to predict more than 20 molecular properties using 48 different datasets.

Identifiants

pubmed: 34895648
pii: S1740-6749(20)30030-5
doi: 10.1016/j.ddtec.2020.11.009
pii:
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

1-12

Informations de copyright

Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.

Auteurs

Oliver Wieder (O)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria.

Stefan Kohlbacher (S)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria.

Mélaine Kuenemann (M)

Servier Research Institute - CentEx Biotechnology, 125 Chemin de Ronde, 78290 Croissy-sur-Seine, France.

Arthur Garon (A)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria.

Pierre Ducrot (P)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria.

Thomas Seidel (T)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria.

Thierry Langer (T)

University of Vienna, Department of Pharmaceutical Chemistry, Althanstraße 14, A-1090 Vienna, Austria. Electronic address: thierry.langer@univie.ac.at.

Articles similaires

Unsupervised learning for real-time and continuous gait phase detection.

Dollaporn Anopas, Yodchanan Wongsawat, Jetsada Arnin
1.00
Humans Gait Neural Networks, Computer Unsupervised Machine Learning Walking
Humans Shoulder Fractures Tomography, X-Ray Computed Neural Networks, Computer Female
Humans Artificial Intelligence Neoplasms Prognosis Image Processing, Computer-Assisted
Humans Chondrocytes Osteoarthritis Matrix Metalloproteinase 13 Drug Discovery

Classifications MeSH