Using virtual reality for anatomical landmark annotation in geometric morphometrics.

3D annotation Geometric morphometrics Halichoerus grypus Measurement error Stratovan checkpoint Virtual morphology Virtual reality

Journal

PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425

Informations de publication

Date de publication:
2022
Historique:
received: 27 10 2021
accepted: 10 01 2022
entrez: 21 2 2022
pubmed: 22 2 2022
medline: 22 2 2022
Statut: epublish

Résumé

To study the shape of objects using geometric morphometrics, landmarks are oftentimes collected digitally from a 3D scanned model. The expert may annotate landmarks using software that visualizes the 3D model on a flat screen, and interaction is achieved with a mouse and a keyboard. However, landmark annotation of a 3D model on a 2D display is a tedious process and potentially introduces error due to the perception and interaction limitations of the flat interface. In addition, digital landmark placement can be more time-consuming than direct annotation on the physical object using a tactile digitizer arm. Since virtual reality (VR) is designed to more closely resemble the real world, we present a VR prototype for annotating landmarks on 3D models. We study the impact of VR on annotation performance by comparing our VR prototype to Stratovan Checkpoint, a commonly used commercial desktop software. We use an experimental setup, where four operators placed six landmarks on six grey seal (

Identifiants

pubmed: 35186472
doi: 10.7717/peerj.12869
pii: 12869
pmc: PMC8830334
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e12869

Informations de copyright

© 2022 Messer et al.

Déclaration de conflit d'intérêts

The authors declare that they have no competing interests.

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Auteurs

Dolores Messer (D)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Michael Atchapero (M)

Department of Psychology, University of Copenhagen, Copenhagen, Denmark.

Mark B Jensen (MB)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Michelle S Svendsen (MS)

Globe Institute, University of Copenhagen, Copenhagen, Denmark.

Anders Galatius (A)

Department of Ecoscience, Aarhus University, Roskilde, Denmark.

Morten T Olsen (MT)

Globe Institute, University of Copenhagen, Copenhagen, Denmark.

Jeppe R Frisvad (JR)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Vedrana A Dahl (VA)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Knut Conradsen (K)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Anders B Dahl (AB)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

Andreas Bærentzen (A)

Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kgs. Lyngby, Denmark.

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