Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
23 02 2022
Historique:
received: 22 01 2021
accepted: 26 01 2022
entrez: 24 2 2022
pubmed: 25 2 2022
medline: 13 4 2022
Statut: epublish

Résumé

The immunomodulatory drugs (IMiDs) lenalidomide and pomalidomide are highly effective treatments for multiple myeloma. However, virtually all patients eventually relapse due to acquired drug resistance with resistance-causing genetic alterations being found only in a small subset of cases. To identify non-genetic mechanisms of drug resistance, we here perform integrated global quantitative tandem mass tag (TMT)-based proteomic and phosphoproteomic analyses and RNA sequencing in five paired pre-treatment and relapse samples from multiple myeloma patients. These analyses reveal a CDK6-governed protein resistance signature that includes myeloma high-risk factors such as TRIP13 and RRM1. Overexpression of CDK6 in multiple myeloma cell lines reduces sensitivity to IMiDs while CDK6 inhibition by palbociclib or CDK6 degradation by proteolysis targeting chimeras (PROTACs) is highly synergistic with IMiDs in vitro and in vivo. This work identifies CDK6 upregulation as a druggable target in IMiD-resistant multiple myeloma and highlights the use of proteomic studies to uncover non-genetic resistance mechanisms in cancer.

Identifiants

pubmed: 35197447
doi: 10.1038/s41467-022-28515-1
pii: 10.1038/s41467-022-28515-1
pmc: PMC8866544
doi:

Substances chimiques

Cell Cycle Proteins 0
Immunologic Factors 0
Ubiquitin-Protein Ligases EC 2.3.2.27
CDK6 protein, human EC 2.7.11.22
Cyclin-Dependent Kinase 6 EC 2.7.11.22
ATPases Associated with Diverse Cellular Activities EC 3.6.4.-
TRIP13 protein, human EC 3.6.4.-
Lenalidomide F0P408N6V4

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1009

Informations de copyright

© 2022. The Author(s).

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Auteurs

Yuen Lam Dora Ng (YLD)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.

Evelyn Ramberger (E)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
Proteomics Platform, Max Delbrück Center for Molecular Medicine, Berlin, Germany.
German Cancer Consortium (DKTK) partner site Berlin and German Cancer Research Center (DKFZ), Heidelberg, Germany.

Stephan R Bohl (SR)

Department of Internal Medicine III, Ulm University Hospital, Ulm, Germany.
Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.

Anna Dolnik (A)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.

Christian Steinebach (C)

Department of Pharmaceutical & Medicinal Chemistry, Pharmaceutical Institute, University of Bonn, Bonn, Germany.

Theresia Conrad (T)

Experimentelle Pharmakologie & Onkologie (EPO) Berlin-Buch GmbH, Berlin, Germany.

Sina Müller (S)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.

Oliver Popp (O)

Proteomics Platform, Max Delbrück Center for Molecular Medicine, Berlin, Germany.

Miriam Kull (M)

Department of Internal Medicine III, Ulm University Hospital, Ulm, Germany.

Mohamed Haji (M)

Proteomics Platform, Max Delbrück Center for Molecular Medicine, Berlin, Germany.

Michael Gütschow (M)

Department of Pharmaceutical & Medicinal Chemistry, Pharmaceutical Institute, University of Bonn, Bonn, Germany.

Hartmut Döhner (H)

Department of Internal Medicine III, Ulm University Hospital, Ulm, Germany.

Wolfgang Walther (W)

Experimental and Clinical Research Center, Charité Universitätsmedizin Berlin and Max-Delbrück-Center for Molecular Medicine, Berlin, Germany.

Ulrich Keller (U)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
German Cancer Consortium (DKTK) partner site Berlin and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Experimental and Clinical Research Center, Charité Universitätsmedizin Berlin and Max-Delbrück-Center for Molecular Medicine, Berlin, Germany.
Berlin Institute of Health (BIH), Berlin, Germany.

Lars Bullinger (L)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.
German Cancer Consortium (DKTK) partner site Berlin and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Berlin Institute of Health (BIH), Berlin, Germany.

Philipp Mertins (P)

Proteomics Platform, Max Delbrück Center for Molecular Medicine, Berlin, Germany. philipp.mertins@mdc-berlin.de.
Berlin Institute of Health (BIH), Berlin, Germany. philipp.mertins@mdc-berlin.de.

Jan Krönke (J)

Department of Hematology, Oncology and Cancer Immunology, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany. jan.kroenke@charite.de.
German Cancer Consortium (DKTK) partner site Berlin and German Cancer Research Center (DKFZ), Heidelberg, Germany. jan.kroenke@charite.de.

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