Optimized multi-axis spiral projection MR fingerprinting with subspace reconstruction for rapid whole-brain high-isotropic-resolution quantitative imaging.
MRF
quantitative mapping
subspace reconstruction
trajectory optimization
Journal
Magnetic resonance in medicine
ISSN: 1522-2594
Titre abrégé: Magn Reson Med
Pays: United States
ID NLM: 8505245
Informations de publication
Date de publication:
07 2022
07 2022
Historique:
revised:
16
12
2021
received:
12
08
2021
accepted:
21
01
2022
pubmed:
25
2
2022
medline:
30
4
2022
entrez:
24
2
2022
Statut:
ppublish
Résumé
To improve image quality and accelerate the acquisition of 3D MR fingerprinting (MRF). Building on the multi-axis spiral-projection MRF technique, a subspace reconstruction with locally low-rank constraint and a modified spiral-projection spatiotemporal encoding scheme called tiny golden-angle shuffling were implemented for rapid whole-brain high-resolution quantitative mapping. Reconstruction parameters such as the locally low-rank regularization parameter and the subspace rank were tuned using retrospective in vivo data and simulated examinations. B The proposed MRF acquisition and reconstruction framework yields high-quality 1-mm isotropic whole-brain quantitative maps in 2 min at better quality compared with 6-min acquisitions of prior approaches. The proposed method was validated to not induce bias in T The proposed tiny golden-angle shuffling, MRF with optimized spiral-projection trajectory and subspace reconstruction enables high-resolution quantitative mapping in ultrafast acquisition time.
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
133-150Subventions
Organisme : NIBIB NIH HHS
ID : U01 EB025162
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB020613
Pays : United States
Organisme : NIMH NIH HHS
ID : R01 MH116173
Pays : United States
Organisme : NIBIB NIH HHS
ID : R03 EB031175
Pays : United States
Organisme : NIBIB NIH HHS
ID : U01 EB026996
Pays : United States
Organisme : NIBIB NIH HHS
ID : P41 EB030006
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB016695
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB028797
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB019437
Pays : United States
Informations de copyright
© 2022 International Society for Magnetic Resonance in Medicine.
Références
Ma D, Gulani V, Seiberlich N, et al. Magnetic resonance fingerprinting. Nature. 2013;495:187-192.
Liao C, Wang K, Cao X, et al. Detection of lesions in mesial temporal lobe epilepsy by using MR fingerprinting. Radiology. 2018;288:804-812.
Wang K, Cao X, Wu D, et al. Magnetic resonance fingerprinting of temporal lobe white matter in mesial temporal lobe epilepsy. Ann Clin Transl Neurol. 2019;6:1639-1646.
Ma D, Jones SE, Deshmane A, et al. Development of high-resolution 3D MR fingerprinting for detection and characterization of epileptic lesions. J Magn Reson Imaging. 2019;49:1333-1346.
Hu S, Choi JY, Mcgivney D, et al. Application of magnetic resonance fingerprinting in epilepsy. MAGNETOM Flash. 2019;4:42-47.
Panda A, Obmann VC, Lo WC, et al. MR fingerprinting and ADC mapping for characterization of lesions in the transition zone of the prostate gland. Radiology. 2019;292:685-694.
Badve C, Yu A, Dastmalchian S, et al. MR fingerprinting of adult brain tumors: initial experience. Am J Neuroradiol. 2017;38:492-499.
Bai Y, Shen Y, Chen R, et al. Magnetic resonance fingerprinting for preoperative differentiation between gonadotroph and non-gonadotroph pituitary macroadenomas. Eur Radiol. 2021;31:8420-8428.
Hamilton JI, Jiang Y, Chen Y, et al. MR fingerprinting for rapid quantification of myocardial T1, T2, and proton spin density. Magn Reson Med. 2017;77:1446-1458.
Fujita S, Buonincontri G, Cencini M, et al. Repeatability and reproducibility of human brain morphometry using three-dimensional magnetic resonance fingerprinting. Hum Brain Mapp. 2021;42:275-285.
Jiang Y, Ma D, Keenan KE, Stupic KF, Gulani V, Griswold MA. Repeatability of magnetic resonance fingerprinting T1 and T2 estimates assessed using the ISMRM/NIST MRI system phantom. Magn Reson Med. 2017;78:1452-1457.
Körzdörfer G, Kirsch R, Liu K, et al. Reproducibility and repeatability of MR fingerprinting relaxometry in the human brain. Radiology. 2019;292:429-437.
Buonincontri G, Biagi L, Retico A, et al. Multi-site repeatability and reproducibility of MR fingerprinting of the healthy brain at 1.5 and 3.0 T. Neuroimage. 2019;195:362-372.
Liu Y, Hamilton J, Eck B, Griswold M, Seiberlich N. Myocardial T1 and T2 quantification and water-fat separation using cardiac MR fingerprinting with rosette trajectories at 3T and 1.5T. Magn Reson Med. 2021;85:103-119.
Huang SS, Boyacioglu R, Bolding R, MacAskill C, Chen Y, Griswold MA. Free-breathing abdominal magnetic resonance fingerprinting using a pilot tone navigator. J Magn Reson Imaging. 2021;54:1-14.
Chen Y, Jiang Y, Pahwa S, et al. MR fingerprinting for rapid quantitative abdominal imaging. Radiology. 2016;279:278-286.
Li Q, Cao X, Ye H, Liao C, He H, Zhong J. Ultrashort echo time magnetic resonance fingerprinting (UTE-MRF) for simultaneous quantification of long and ultrashort T2 tissues. Magn Reson Med. 2019;82:1359-1372.
Pierre EY, Ma D, Chen Y, Badve C, Griswold MA. Multiscale reconstruction for MR fingerprinting. Magn Reson Med. 2016;75:2481-2492.
Cao X, Liao C, Wang Z, et al. Robust sliding-window reconstruction for accelerating the acquisition of MR fingerprinting. Magn Reson Med. 2017;78:1579-1588.
Assländer J, Cloos MA, Knoll F, Sodickson DK, Hennig J, Lattanzi R. Low rank alternating direction method of multipliers reconstruction for MR fingerprinting. Magn Reson Med. 2018;79:83-96.
Lima da Cruz G, Bustin A, Jaubert O, Schneider T, Botnar RM, Prieto C. Sparsity and locally low rank regularization for MR fingerprinting. Magn Reson Med. 2019;81:3530-3543.
Zhao B, Setsompop K, Adalsteinsson E, et al. Improved magnetic resonance fingerprinting reconstruction with low-rank and subspace modeling. Magn Reson Med. 2018;79:933-942.
Bustin A, Lima da Cruz G, Jaubert O, Lopez K, Botnar RM, Prieto C. High-dimensionality undersampled patch-based reconstruction (HD-PROST) for accelerated multi-contrast MRI. Magn Reson Med. 2019;81:3705-3719.
Cohen O, Zhu B, Rosen MS. MR fingerprinting Deep RecOnstruction NEtwork (DRONE). Magn Reson Med. 2018;80:885-894.
Chen Y, Fang Z, Hung SC, Chang WT, Shen D, Lin W. High-resolution 3D MR fingerprinting using parallel imaging and deep learning. Neuroimage. 2020;206:116329.
Ma D, Coppo S, Chen Y, et al. Slice profile and B1 corrections in 2D magnetic resonance fingerprinting. Magn Reson Med. 2017;78:1781-1789.
Ostenson J, Damon BM, Welch EB. MR fingerprinting with simultaneous T1, T2, and fat signal fraction estimation with integrated B 0 correction reduces bias in water T1 and T2 estimates. Magn Reson Imaging. 2019;60:7-19.
Ostenson J, Robison RK, Zwart NR, Welch EB. Multi-frequency interpolation in spiral magnetic resonance fingerprinting for correction of off-resonance blurring. Magn Reson Imaging. 2017;41:63-72.
Ye H, Ma D, Jiang Y, et al. Accelerating magnetic resonance fingerprinting (MRF) using t-blipped simultaneous multislice (SMS) acquisition. Magn Reson Med. 2016;75:2078-2085.
Jiang Y, Ma D, Bhat H, et al. Use of pattern recognition for unaliasing simultaneously acquired slices in simultaneous multislice MR fingerprinting. Magn Reson Med. 2017;78:1870-1876.
Liao C, Bilgic B, Manhard MK, et al. 3D MR fingerprinting with accelerated stack-of-spirals and hybrid sliding-window and GRAPPA reconstruction. Neuroimage. 2017;162:13-22.
Ma D, Jiang Y, Chen Y, et al. Fast 3D magnetic resonance fingerprinting for a whole-brain coverage. Magn Reson Med. 2018;79:2190-2197.
Cao X, Ye H, Liao C, Li Q, He H, Zhong J. Fast 3D brain MR fingerprinting based on multi-axis spiral projection trajectory. Magn Reson Med. 2019;82:289-301.
Ma S, Wang N, Fan Z, et al. Three-dimensional whole-brain simultaneous T1, T2, and T1ρ quantification using MR multitasking: method and initial clinical experience in tissue characterization of multiple sclerosis. Magn Reson Med. 2021;85:1938-1952.
Wang F, Dong Z, Reese TG, Rosen B, Wald LL, Setsompop K. 3D echo planar time-resolved imaging (3D-EPTI) for ultrafast multi-parametric quantitative MRI. biorxiv 2021. 10.1101/2021.05.06.443040.
Man LC, Pauly JM, Macovski A. Multifrequency interpolation for fast off-resonance correction. Magn Reson Med. 1997;37:785-792.
Cao X, Liao C, Iyer SS, et al. Optimized multi-axis spiral projection MRF with subspace reconstruction for rapid 1-mm isotropic whole-brain MRF in 2 minutes. Proc Intl Soc Mag Reson Med. 2021;29:0173.
Jiang Y, Ma D, Seiberlich N, Gulani V, Griswold MA. MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout. Magn Reson Med. 2015;74:1621-1631.
Ma YJ, Tadros A, Du J, Chang EY. Quantitative two-dimensional ultrashort echo time magnetization transfer (2D UTE-MT) imaging of cortical bone. Magn Reson Med. 2018;79:1941-1949.
Cline HE, Zong X, Gai N. Design of a logarithmic k-space spiral trajectory. Magn Reson Med. 2001;46:1130-1135.
Pipe JG, Zwart NR. Spiral trajectory design: a flexible numerical algorithm and base analytical equations. Magn Reson Med. 2014;71:278-285.
Wundrak S, Paul J, Ulrici J, et al. Golden ratio sparse MRI using tiny golden angles. Magn Reson Med. 2016;75:2372-2378.
Weigel M. Extended phase graphs: dephasing, RF pulses, and echoes-pure and simple. J Magn Reson Imaging. 2015;41:266-295.
Gómez PA, Cencini M, Golbabaee M, et al. Rapid three-dimensional multiparametric MRI with quantitative transient-state imaging. Sci Rep. 2020;10. https://doi.org/10.1038/s41598-020-70789-2
Tamir JI, Uecker M, Chen W, et al. T2 shuffling: sharp, multicontrast, volumetric fast spin-echo imaging. Magn Reson Med. 2017;77:180-195.
Cao X, Wang K, Liao C, et al. Efficient T2 mapping with blip-up/down EPI and gSlider-SMS (T2-BUDA-gSlider). Magn Reson Med. 2021;86:2064-2075.
Dong Z, Wang F, Reese TG, Bilgic B, Setsompop K. Echo planar time-resolved imaging with subspace reconstruction and optimized spatiotemporal encoding. Magn Reson Med. 2020;84:2442-2455.
Liang Z. Spatiotemporal imaging with partially separable functions. In: Proceedings of the 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, Virginia, 2007. pp 988-991.
Zhang T, Pauly JM, Levesque IR. Accelerating parameter mapping with a locally low rank constraint. Magn Reson Med. 2015;73:655-661.
Uecker M, Lai P, Murphy MJ, et al. ESPIRiT-an eigenvalue approach to autocalibrating parallel MRI: where SENSE meets GRAPPA. Magn Reson Med. 2014;71:990-1001.
Huang F, Vijayakumar S, Li Y, Hertel S, Duensing GR. A software channel compression technique for faster reconstruction with many channels. Magn Reson Imaging. 2008;26:133-141.
Uecker M, Tamir JI, Ong F, Lustig M. The BART toolbox for computational magnetic resonance imaging. In: Proceedings of the 24th Annual Meeting of ISMRM, Singapore, 2016.
McGivney DF, Pierre E, Ma D, et al. SVD compression for magnetic resonance fingerprinting in the time domain. IEEE Trans Med Imaging. 2014;33:2311-2322.
Chung S, Kim D, Breton E, Axel L. Rapid B1+ mapping using a preconditioning RF pulse with turboFLASH readout. Magn Reson Med. 2010;64:439-446.
Stanisz GJ, Odrobina EE, Pun J, et al. T1, T2 relaxation and magnetization transfer in tissue at 3T. Magn Reson Med. 2005;54:507-512.
Liney GP, Knowles AJ, Manton DJ, Turnbull LW, Blackband SJ, Horsman A. Comparison of conventional single echo and multi-echo sequences with a fast spin-echo sequence for quantitative T2 mapping: application to the prostate. J Magn Reson Imaging. 1996;6:603-607.
Fischl B, Salat DH, Busa E, et al. Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron. 2002;33:341-355.
Jenkinson M, Bannister P, Brady M, Smith S. Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage. 2002;17:825-841.
Ong F, Zhu X, Cheng JY, et al. Extreme MRI: large-scale volumetric dynamic imaging from continuous non-gated acquisitions. Magn Reson Med. 2020;84:1763-1780.
De Zanche N, Barmet C, Nordmeyer-Massner JA, Pruessmann KP. NMR probes for measuring magnetic fields and field dynamics in MR systems. Magn Reson Med. 2008;60:176-186.
Wilm BJ, Barmet C, Gross S, et al. Single-shot spiral imaging enabled by an expanded encoding model: demonstration in diffusion MRI. Magn Reson Med. 2017;77:83-91.
Iyer SS, Liao C, Li Q, et al. PhysiCal: a rapid calibration scan for B0, B1+, coil sensitivity and Eddy current mapping. In: Proceedings of the Annual Meeting of ISMRM [Virtual], 2020. p 661.
Körzdörfer G, Jiang Y, Speier P, et al. Magnetic resonance field fingerprinting. Magn Reson Med. 2019;81:2347-2359.
Liao C, Cao X, Gong T, et al. High-resolution myelin-water fraction (MWF) and T1/T2/proton-density mapping using 3D ViSTa-MR ngerprinting with subspace reconstruction. In: Proceedings of the Annual Meeting of ISMRM [Virtual], 2021. p 1545.
Castets CR, Lefrançois W, Wecker D, et al. Fast 3D ultrashort echo-time spiral projection imaging using golden-angle: a flexible protocol for in vivo mouse imaging at high magnetic field. Magn Reson Med. 2017;77:1831-1840.
Koolstra K, Beenakker JWM, Koken P, Webb A, Börnert P. Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion-based reconstructions. Magn Reson Med. 2019;81:2551-2565.
Buonincontri G, Schulte RF, Cosottini M, Tosetti M. Spiral MR fingerprinting at 7 T with simultaneous B1 estimation. Magn Reson Imaging. 2017;41:1-6.
Foo TKF, Tan ET, Vermilyea ME, et al. Highly efficient head-only magnetic field insert gradient coil for achieving simultaneous high gradient amplitude and slew rate at 3.0T (MAGNUS) for brain microstructure imaging. Magn Reson Med. 2020;83:2356-2369.
Foo TKF, Laskaris E, Vermilyea M, et al. Lightweight, compact, and high-performance 3T MR system for imaging the brain and extremities. Magn Reson Med. 2018;80:2232-2245.
Feinberg DA, Dietz P, Liu C, et al. Design and development of a next-generation 7T human brain scanner with high-performance gradient coil and dense RF arrays. In: Proceedings of Annual ISMRM Virtual Conference & Exhibition [Virtual], 2021. p 562.