Identification and Validation of Pathogenic Genes in Sepsis and Associated Diseases by Integrated Bioinformatics Approach.


Journal

Genes
ISSN: 2073-4425
Titre abrégé: Genes (Basel)
Pays: Switzerland
ID NLM: 101551097

Informations de publication

Date de publication:
24 01 2022
Historique:
received: 12 12 2021
revised: 14 01 2022
accepted: 19 01 2022
entrez: 25 2 2022
pubmed: 26 2 2022
medline: 26 4 2022
Statut: epublish

Résumé

Sepsis is a clinical syndrome with high mortality and morbidity rates. In sepsis, the abrupt release of cytokines by the innate immune system may cause multiorgan failure, leading to septic shock and associated complications. In the presence of a number of systemic disorders, such as sepsis, infections, diabetes, and systemic lupus erythematosus (SLE), cardiorenal syndrome (CRS) type 5 is defined by concomitant cardiac and renal dysfunctions Thus, our study suggests that certain mRNAs and unexplored pathways may pave a way to unravel critical therapeutic targets in three debilitating and interrelated illnesses, namely, sepsis, SLE, and CRS. Sepsis, SLE, and CRS are closely interrelated complex diseases likely sharing an overlapping pathogenesis caused by erroneous gene network activities. We sought to identify the shared gene networks and the key genes for sepsis, SLE, and CRS by completing an integrative analysis. Initially, 868 DEGs were identified in 16 GSE datasets. Based on degree centrality, 27 hub genes were revealed. The gProfiler webtool was used to perform functional annotations and enriched molecular pathway analyses. Finally, core hub genes (

Identifiants

pubmed: 35205254
pii: genes13020209
doi: 10.3390/genes13020209
pmc: PMC8872348
pii:
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Références

Immunol Rev. 2016 Nov;274(1):330-353
pubmed: 27782333
Eur Rev Med Pharmacol Sci. 2014 Oct;18(19):2918-26
pubmed: 25339487
J Pers Med. 2020 Mar 31;10(2):
pubmed: 32244292
Yale J Biol Med. 2019 Dec 20;92(4):629-640
pubmed: 31866778
PLoS One. 2008;3(11):e3686
pubmed: 18997871
EJIFCC. 2019 Jun 24;30(2):128-145
pubmed: 31263389
Kidney Int. 2019 Jun;95(6):1389-1404
pubmed: 30955870
Lupus. 2010 May;19(6):683-8
pubmed: 20064914
Bioinform Biol Insights. 2021 Jun 30;15:11779322211027396
pubmed: 34276211
J Mol Histol. 2013 Feb;44(1):117-24
pubmed: 23138560
J Crit Care. 2018 Feb;43:122-127
pubmed: 28881261
Pathol Res Pract. 2018 Dec;214(12):1966-1973
pubmed: 30249503
Clin Microbiol Infect. 2015 Apr;21(4):323-31
pubmed: 25686695
Autoimmunity. 2014 Jun;47(4):272-85
pubmed: 24826805
Circulation. 1999 Jul 27;100(4):400-6
pubmed: 10421601
Front Bioeng Biotechnol. 2020 Apr 30;8:276
pubmed: 32426333
J Pers Med. 2020 Feb 27;10(1):
pubmed: 32120849
PLoS One. 2018 Jan 9;13(1):e0190965
pubmed: 29315332
J Pers Med. 2019 Aug 07;9(3):
pubmed: 31394823
Cancer Cell Int. 2020 Jul 20;20:327
pubmed: 32699526
J Surg Res. 2003 May 15;111(2):185-95
pubmed: 12850461
PLoS One. 2018 Jun 19;13(6):e0198555
pubmed: 29920518
BioData Min. 2020 Jul 8;13:8
pubmed: 32670412
Front Pharmacol. 2020 May 15;11:726
pubmed: 32499708
BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S2
pubmed: 18460184
Rheumatology (Oxford). 2019 Oct 1;58(10):1794-1801
pubmed: 31323667
Lupus. 2018 Oct;27(12):1936-1943
pubmed: 30185096
Indian Heart J. 2017 Mar - Apr;69(2):255-265
pubmed: 28460776
J Intensive Care. 2020 Jan 6;8:3
pubmed: 31921427
Nucleic Acids Res. 2015 Apr 20;43(7):e47
pubmed: 25605792
PLoS One. 2013 Dec 31;8(12):e83776
pubmed: 24391825
J Biol Chem. 2019 Dec 27;294(52):20177-20184
pubmed: 31732563
J Immunol. 2009 Feb 15;182(4):2063-73
pubmed: 19201859
Clin Chim Acta. 2019 Apr;491:59-65
pubmed: 30639583
EMBO Mol Med. 2012 Dec;4(12):1261-75
pubmed: 23109291
Autoimmune Dis. 2012;2012:207190
pubmed: 22900150
PLoS One. 2011 Feb 28;6(2):e17238
pubmed: 21386892
Intensive Care Med Exp. 2017 Aug 30;5(1):38
pubmed: 28856588
Front Pharmacol. 2017 May 03;8:237
pubmed: 28515693
Crit Care. 2014 Jan 06;18(1):201
pubmed: 24393300
Life Sci. 2018 Sep 15;209:197-201
pubmed: 30089233
J Thromb Haemost. 2013 Jul;11(7):1385-98
pubmed: 23617547
Crit Care. 2011 Jun 20;15(3):R149
pubmed: 21682927
J Intensive Care. 2020 Nov 2;8(1):84
pubmed: 33292630
Front Oncol. 2021 Aug 19;11:714866
pubmed: 34490113
Biomed Res Int. 2014;2014:594350
pubmed: 24809055
PLoS One. 2018 May 9;13(5):e0196117
pubmed: 29742110
PLoS One. 2018 Oct 18;13(10):e0206239
pubmed: 30335862
Oxid Med Cell Longev. 2021 Feb 10;2021:8889313
pubmed: 33628393
Front Cardiovasc Med. 2020 Apr 28;7:64
pubmed: 32411724
Sci Adv. 2021 Jan 13;7(3):
pubmed: 33523892
PLoS One. 2009 Jul 01;4(7):e6098
pubmed: 19568420
Shock. 2016 Feb;45(2):148-56
pubmed: 26536201
J Diabetes Res. 2013;2013:970435
pubmed: 24455749
Nucleic Acids Res. 2012 Dec;40(22):11673-83
pubmed: 23034802
J Pers Med. 2019 Jan 16;9(1):
pubmed: 30654522
PLoS One. 2012;7(9):e41339
pubmed: 22957013
Mol Med Rep. 2018 Feb;17(2):3042-3054
pubmed: 29257295
Lupus Sci Med. 2015 Mar 28;2(1):e000080
pubmed: 25861459
Hum Pathol. 2006 Apr;37(4):422-30
pubmed: 16564916
Cell Biochem Biophys. 2014 Jan;68(1):25-35
pubmed: 23797610
J Leukoc Biol. 2015 Dec;98(6):1081-90
pubmed: 26224052
J Biol Chem. 1996 Jun 21;271(25):14657-60
pubmed: 8663297
J Am Soc Nephrol. 2005 Jul;16(7):2034-43
pubmed: 15901765
Eur Heart J. 2018 Aug 1;39(29):2704-2716
pubmed: 28430919
Am J Physiol Renal Physiol. 2012 Nov 1;303(9):F1253-63
pubmed: 22914779
Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370
pubmed: 29194489
Int J Mol Sci. 2019 Oct 29;20(21):
pubmed: 31671729
J Clin Immunol. 2014 Apr;34(3):340-8
pubmed: 24668300
Crit Care. 2012 Oct 04;16(5):R183
pubmed: 23036193
J Immunol. 2008 Feb 15;180(4):2625-33
pubmed: 18250474
J Bras Nefrol. 2018 Apr-Jun;40(2):105-111
pubmed: 29738042
Clin Exp Pharmacol Physiol. 2012 Aug;39(8):692-700
pubmed: 22014026
Kidney Blood Press Res. 2016;41(6):1008-1015
pubmed: 28006779
Scand J Infect Dis. 2006;38(10):867-72
pubmed: 17008230
Shock. 2011 Jun;35(6):567-72
pubmed: 21330943
Life Sci. 2020 Jul 1;252:117589
pubmed: 32220622
Nephrology (Carlton). 2018 Oct;23 Suppl 4:68-71
pubmed: 30298648
In Vivo. 2013 Nov-Dec;27(6):669-84
pubmed: 24292568
Sci Rep. 2020 Mar 17;10(1):4894
pubmed: 32184430
Front Immunol. 2018 Oct 16;9:2381
pubmed: 30459760
BMC Pulm Med. 2019 May 14;19(1):93
pubmed: 31088429
Exp Ther Med. 2017 Oct;14(4):2853-2862
pubmed: 28912847
Am J Respir Crit Care Med. 2016 Feb 1;193(3):259-72
pubmed: 26414292
Pharm Biol. 2020 Dec;58(1):417-426
pubmed: 32429724
Genes (Basel). 2020 Nov 10;11(11):
pubmed: 33182754
J Chin Med Assoc. 2020 Jan;83(1):41-47
pubmed: 31567880
J Lipids. 2015;2015:971453
pubmed: 25949827
J Autoimmun. 2020 Jun;110:102374
pubmed: 31812331
Exp Ther Med. 2021 Jan;21(1):2
pubmed: 33235611
BMC Infect Dis. 2019 Nov 12;19(1):968
pubmed: 31718563
Elife. 2015 Aug 12;4:
pubmed: 26267216

Auteurs

Mohd Murshad Ahmed (MM)

Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.

Almaz Zaki (A)

Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.

Alaa Alhazmi (A)

Medical Laboratory Technology Department, SMIRES for Consultation in Specialized, Jazan University, Jazan 45142, Saudi Arabia.

Khalaf F Alsharif (KF)

Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Taif University, Taif 21944, Saudi Arabia.

Hala Abubaker Bagabir (HA)

Department of Medical Physiology, Faculty of Medicine, King Abdulaziz University, Rabigh 21589, Saudi Arabia.

Shafiul Haque (S)

Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan 45142, Saudi Arabia.

Kailash Manda (K)

Institute of Nuclear Medicine and Applied Sciences, Defense Research Development Organization, New Delhi 110054, India.

Shaniya Ahmad (S)

Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.

Syed Mansoor Ali (SM)

Translational Research Lab, Department of Biotechnology, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi 110025, India.

Romana Ishrat (R)

Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India.

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