Structure, Oligomerization and Activity Modulation in N-Ribohydrolases.

N-ribohydrolases drug design quaternary structure ribosides structural enzymology

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
25 Feb 2022
Historique:
received: 05 01 2022
revised: 18 02 2022
accepted: 22 02 2022
entrez: 10 3 2022
pubmed: 11 3 2022
medline: 9 4 2022
Statut: epublish

Résumé

Enzymes catalyzing the hydrolysis of the N-glycosidic bond in nucleosides and other ribosides (N-ribohydrolases, NHs) with diverse substrate specificities are found in all kingdoms of life. While the overall NH fold is highly conserved, limited substitutions and insertions can account for differences in substrate selection, catalytic efficiency, and distinct structural features. The NH structural module is also employed in monomeric proteins devoid of enzymatic activity with different physiological roles. The homo-oligomeric quaternary structure of active NHs parallels the different catalytic strategies used by each isozyme, while providing a buttressing effect to maintain the active site geometry and allow the conformational changes required for catalysis. The unique features of the NH catalytic strategy and structure make these proteins attractive targets for diverse therapeutic goals in different diseases.

Identifiants

pubmed: 35269719
pii: ijms23052576
doi: 10.3390/ijms23052576
pmc: PMC8910321
pii:
doi:

Substances chimiques

Nucleosides 0

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Références

Bioorg Med Chem Lett. 2015 Nov 15;25(22):5036-9
pubmed: 26592812
Eur J Med Chem. 2008 Feb;43(2):315-26
pubmed: 17582660
Nano Lett. 2005 Nov;5(11):2220-4
pubmed: 16277457
J Biol Chem. 2009 Jan 2;284(1):158-164
pubmed: 19001417
Proteins. 2014 Nov;82(11):2910-4
pubmed: 25079351
J Biol Chem. 1967 Dec 10;242(23):5578-85
pubmed: 12325375
FEBS Lett. 1984 Oct 15;176(1):55-60
pubmed: 6333357
Insect Biochem Mol Biol. 2003 Jan;33(1):13-22
pubmed: 12459196
Plant Physiol. 2013 Dec;163(4):1568-83
pubmed: 24170203
Biochemistry. 1992 Jul 7;31(26):5964-73
pubmed: 1627539
Ann Trop Med Parasitol. 1985 Feb;79(1):7-11
pubmed: 3920982
Planta. 2021 Aug 7;254(3):45
pubmed: 34365553
J Bacteriol. 2003 Jun;185(11):3373-8
pubmed: 12754235
New Phytol. 2014 Jan;201(2):585-598
pubmed: 24124900
Front Immunol. 2019 Apr 16;10:813
pubmed: 31040850
Biochemistry. 2005 Jan 25;44(3):883-92
pubmed: 15654744
Plant Cell. 2019 Mar;31(3):734-751
pubmed: 30787180
Mol Biochem Parasitol. 2000 Feb 25;106(1):93-107
pubmed: 10743614
Protein Sci. 2017 May;26(5):985-996
pubmed: 28218438
J Struct Biol. 2013 Nov;184(2):361-6
pubmed: 24007778
Acta Crystallogr D Biol Crystallogr. 2003 Jun;59(Pt 6):1087-9
pubmed: 12777783
Mol Biochem Parasitol. 1984 Nov;13(3):243-61
pubmed: 6396514
Cell Host Microbe. 2020 Mar 11;27(3):345-357.e6
pubmed: 32078802
Biochemistry. 2010 Oct 19;49(41):8999-9010
pubmed: 20825170
Biochemistry. 1994 Apr 5;33(13):3994-4000
pubmed: 8142404
Cell. 2013 Jan 17;152(1-2):196-209
pubmed: 23332755
BMC Struct Biol. 2010 Jun 08;10:14
pubmed: 20529317
Biomolecules. 2020 Apr 05;10(4):
pubmed: 32260512
Cancer Gene Ther. 2008 Jul;15(7):474-84
pubmed: 18437183
J Nutr. 2016 May;146(5):957-63
pubmed: 27052539
Int Rev Neurobiol. 2014;119:349-71
pubmed: 25175972
J Biol Chem. 1995 Nov 24;270(47):28153-7
pubmed: 7499305
Mem Inst Oswaldo Cruz. 2017 Mar;112(3):203-208
pubmed: 28225907
J Biol Chem. 1999 Jul 23;274(30):21114-20
pubmed: 10409664
Biochemistry. 1996 May 14;35(19):5963-70
pubmed: 8634237
Microbiology (Reading). 2008 May;154(Pt 5):1333-1340
pubmed: 18451042
Methods Enzymol. 1978;51:290-6
pubmed: 357896
Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1553-66
pubmed: 23897478
J Am Chem Soc. 2002 Dec 11;124(49):14591-600
pubmed: 12465969
Nature. 2000 Feb 10;403(6770):623-7
pubmed: 10688190
Curr Genet. 2002 Jun;41(3):132-41
pubmed: 12111094
Biochemistry. 2006 Jan 24;45(3):773-82
pubmed: 16411753
J Mol Model. 2011 Nov;17(11):2939-51
pubmed: 21318235
Curr Med Chem. 2015;22(34):3897-909
pubmed: 26295462
J Biol Chem. 2001 Jan 12;276(2):884-94
pubmed: 11027694
Arch Biochem Biophys. 2010 May;497(1-2):35-42
pubmed: 20226755
Biochemistry. 1998 May 5;37(18):6277-85
pubmed: 9572842
Tropenmed Parasitol. 1975 Mar;26(1):19-26
pubmed: 238316
Nature. 2006 Mar 30;440(7084):637-43
pubmed: 16554755
J Mol Biol. 2004 Apr 16;338(1):1-6
pubmed: 15050818
EMBO J. 1998 Jun 15;17(12):3219-32
pubmed: 9628859
J Mol Biol. 2001 Apr 13;307(5):1363-79
pubmed: 11292348
Genome Res. 2017 Jan;27(1):95-106
pubmed: 27821408
Structure. 2004 May;12(5):739-49
pubmed: 15130467
FEBS J. 2008 Apr;275(8):1900-14
pubmed: 18355316
J Struct Biol. 2020 Apr 1;210(1):107462
pubmed: 31962159
J Biol Chem. 1994 Sep 16;269(37):23068-73
pubmed: 8083208
Bioorg Med Chem Lett. 2007 May 1;17(9):2523-6
pubmed: 17317181
PLoS Negl Trop Dis. 2010 Nov 09;4(11):e866
pubmed: 21085470
J Biol Chem. 2005 Apr 15;280(15):14799-802
pubmed: 15695817
Proteins. 2011 Oct;79(10):2992-8
pubmed: 21905122
Arabidopsis Book. 2014 Jan 02;12:e0168
pubmed: 24465173
Cell Mol Life Sci. 2008 Sep;65(18):2875-96
pubmed: 18560757
Bioorg Med Chem. 2008 Jul 15;16(14):6752-63
pubmed: 18571422
Biochem J. 2002 Jan 1;361(Pt 1):1-25
pubmed: 11743878
Cell. 2007 May 4;129(3):473-84
pubmed: 17482543
Science. 2005 Jul 15;309(5733):416-22
pubmed: 16020726
Biochemistry. 1993 Jul 20;32(28):7089-97
pubmed: 8343502
Antimicrob Agents Chemother. 2010 May;54(5):1900-8
pubmed: 20194690
Biochemistry. 1996 May 14;35(19):5971-81
pubmed: 8634238
PLoS Genet. 2014 Feb 20;10(2):e1004120
pubmed: 24586182
J Biol Chem. 1975 Jan 10;250(1):9-13
pubmed: 237897
J Am Chem Soc. 2010 Dec 15;132(49):17570-7
pubmed: 21082835
J Mol Biol. 2006 Jun 2;359(2):331-46
pubmed: 16630632
Mol Microbiol. 2011 Jan;79(1):7-20
pubmed: 21166890
Biochemistry. 2003 Nov 11;42(44):12902-8
pubmed: 14596604
Chem Biol Drug Des. 2018 Oct;92(4):1736-1742
pubmed: 29808562
Antonie Van Leeuwenhoek. 1990 May;57(4):253-7
pubmed: 2112895
J Biol Chem. 1991 Nov 5;266(31):20658-65
pubmed: 1939115
Science. 2020 Dec 4;370(6521):
pubmed: 33273074
J Bacteriol. 2005 Jul;187(14):4875-83
pubmed: 15995202
Cell. 2004 May 14;117(4):495-502
pubmed: 15137942
Plant J. 2011 Mar;65(5):703-11
pubmed: 21235647
Biochemistry. 2012 Jun 5;51(22):4590-9
pubmed: 22551416
Wiley Interdiscip Rev RNA. 2020 Sep;11(5):e1595
pubmed: 32301288
Biochemistry. 1991 Nov 5;30(44):10788-95
pubmed: 1931998
Genome Res. 2006 May;16(5):686-91
pubmed: 16606699
Nucleosides Nucleotides Nucleic Acids. 2017 Jan 2;36(1):7-30
pubmed: 27759477
Biochemistry. 2008 Apr 15;47(15):4418-26
pubmed: 18361502
Protein Expr Purif. 2019 Feb;154:140-146
pubmed: 30366031
J Control Release. 2005 Jan 20;102(1):171-9
pubmed: 15653143
PLoS One. 2013;8(3):e59684
pubmed: 23555744
J Biol Chem. 1996 Sep 6;271(36):21713-9
pubmed: 8702965
Biochim Biophys Acta. 2014 Mar;1844(3):656-62
pubmed: 24473221
ACS Infect Dis. 2019 Mar 8;5(3):345-352
pubmed: 30701958
Phytochemistry. 2006 Jan;67(1):5-12
pubmed: 16300810
Appl Microbiol Biotechnol. 2013 May;97(10):4393-401
pubmed: 22868826
Arch Biochem Biophys. 2009 Mar 1;483(1):55-65
pubmed: 19121283
Mol Genet Metab. 2005 Sep-Oct;86(1-2):25-33
pubmed: 16176880
J Biol Chem. 2008 Aug 8;283(32):22272-82
pubmed: 18519562
Arch Biochem Biophys. 2013 Oct 15;538(2):80-94
pubmed: 23988349
Nature. 2014 Apr 17;508(7496):402-5
pubmed: 24590073
Protein Expr Purif. 2019 Sep;161:40-48
pubmed: 31034876

Auteurs

Massimo Degano (M)

Biocrystallography Unit, Division of Immunology, Transplantation, and Infectious Diseases, IRCCS Scientific Institute San Raffaele, via Olgettina 60, 20132 Milano, Italy.
Università Vita-Salute San Raffaele, via Olgettina 58, 20132 Milano, Italy.

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