The impact of the cyanobacterial carbon-regulator protein SbtB and of the second messengers cAMP and c-di-AMP on CO
PII-like
c-di-AMP
inorganic carbon acclimation
photosynthesis
signaling
transcriptomics
Journal
The New phytologist
ISSN: 1469-8137
Titre abrégé: New Phytol
Pays: England
ID NLM: 9882884
Informations de publication
Date de publication:
06 2022
06 2022
Historique:
received:
26
11
2021
accepted:
02
03
2022
pubmed:
15
3
2022
medline:
30
4
2022
entrez:
14
3
2022
Statut:
ppublish
Résumé
The amount of inorganic carbon (C
Substances chimiques
Bacterial Proteins
0
Dinucleoside Phosphates
0
cyclic diadenosine phosphate
0
Carbon Dioxide
142M471B3J
Carbon
7440-44-0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
1801-1816Informations de copyright
© 2022 The Authors. New Phytologist © 2022 New Phytologist Foundation.
Références
Agostoni M, Logan-Jackson AR, Heinz ER, Severin GB, Bruger EL, Waters CM, Montgomery BL. 2018. Homeostasis of second messenger cyclic-di-AMP is critical for cyanobacterial fitness and acclimation to abiotic stress. Frontiers in Microbiology 9: 1121.
Battchikova N, Eisenhut M, Aro EM. 2011. Cyanobacterial NDH-1 complexes: novel insights and remaining puzzles. Biochimica et Biophysica Acta 1807: 935-944.
Bolay P, Rozbeh R, Muro-Pastor MI, Timm S, Hagemann M, Florencio FJ, Forchhammer K, Klähn S. 2021. The novel PII-interacting protein PirA controls flux into the cyanobacterial ornithine-ammonia cycle. mBio 12: e00229-21.
Brandenburg F, Klähn S. 2020. Small but smart: on the diverse role of small proteins in the regulation of cyanobacterial metabolism. Life 10: 322.
Cann MJ, Hammer A, Zhou J, Kanacher T. 2003. A defined subset of adenylyl cyclases is regulated by bicarbonate ion. Journal of Biological Chemistry 278: 35033-35038.
Daley SME, Kappell AD, Carrick MJ, Burnap RL. 2012. Regulation of the cyanobacterial CO2-concentrating mechanism involves internal sensing of NADP+ and α-ketogutarate levels by transcription factor CcmR. PLoS ONE 7: e41286.
Doello S, Burkhardt M, Forchhammer K. 2021. The essential role of sodium bioenergetics and ATP homeostasis in the developmental transitions of a cyanobacterium. Current Biology 31: 1606-1615.
Du J, Förster B, Rourke L, Howitt SM, Price GD. 2014. Characterisation of cyanobacterial bicarbonate transporters in E. coli shows that SbtA homologs are functional in this heterologous expression system. PLoS ONE 9: e115905.
Fang S, Huang X, Zhang X, Zhang M, Hao Y, Guo H, Liu LN, Yu F, Zhang P. 2021. Molecular mechanism underlying transport and allosteric inhibition of bicarbonate transporter SbtA. Proceedings of the National Academy of Sciences, USA 118: e2101632118.
Flügel F, Timm S, Arrivault S, Florian A, Stitt M, Fernie AR, Bauwe H. 2017. The photorespiratory metabolite 2-phosphoglycolate regulates photosynthesis and starch accumulation in Arabidopsis. Plant Cell 29: 2537-2551.
Forchhammer K, Selim KA. 2020. Carbon/nitrogen homeostasis control in cyanobacteria. FEMS Microbiology Reviews 44: 33-53.
García-Domínguez M, Reyes JC, Florencio FJ. 1997. Purification and characterization of a new type of glutamine synthetase from cyanobacteria. European Journal of Biochemistry 244: 258-264.
Hagemann M, Kern R, Maurino VG, Hanson DT, Weber APM, Sage RF, Bauwe H. 2016. Evolution of photorespiration from cyanobacteria to land plants considering protein phylogenies and acquisition of carbon concentrating mechanisms. Journal of Experimental Botany 67: 2963-2976.
Hagemann M, Song S, Brouwer EM. 2021. Chapter 1: Inorganic carbon assimilation in cyanobacteria: mechanisms, regulation, and engineering. In: Hudson P, Lee SY, Nielsen J, eds. Cyanobacteria biotechnology, Wiley-Blackwell biotechnology series. Weinheim, Germany: Wiley-Blackwell, 1-31.
Hammer A, Hodgson DR, Cann MJ. 2006. Regulation of prokaryotic adenylyl cyclases by CO2. Biochemical Journal 396: 215-218.
Hein S, Scholz I, Voß B, Hess WR. 2013. Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. RNA Biology 10: 852-864.
Jablonsky J, Papacek S, Hagemann M. 2016. Different strategies of metabolic regulation in cyanobacteria: from transcriptional to biochemical control. Scientific Reports 6: 33024.
Jesser R, Behler J, Benda C, Reimann V, Hess WR. 2019. Biochemical analysis of the Cas6-1 RNA endonuclease associated with the subtype I-D CRISPR-Cas system in Synechocystis sp. PCC 6803. RNA Biology 16: 481-491.
Jiang Y-L, Wang X-P, Sun H, Han S-J, Li W-F, Cui N, Lin G-M, Zhang J-Y, Cheng W, Cao D-D et al. 2018. Coordinating carbon and nitrogen metabolic signaling through the cyanobacterial global repressor NdhR. Proceedings of the National Academy of Sciences, USA 115: 403-408.
Kanesaki Y, Suzuki I, Allakhverdiev SI, Mikami K, Murata N. 2002. Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803. Biochemical Biophysical Research Communications 290: 339-348.
Klähn S, Mikkat S, Riediger M, Georg J, Hess WR, Hagemann M. 2021. Integrative analysis of the salt stress response in cyanobacteria. Biology Direct 16: 26.
Klähn S, Orf I, Schwarz D, Matthiessen JKF, Kopka J, Hess WR, Hagemann M. 2015. Integrated transcriptomic and metabolomic characterization of the low-carbon response using an ndhR mutant of Synechocystis sp. PCC 6803. Plant Physiology 169: 1540-1556.
Klotz A, Georg J, Bučinská L, Watanabe S, Reimann V, Januszewski W, Sobotka R, Jendrossek D, Hess WR, Forchhammer K. 2016. Awakening of a dormant cyanobacterium from nitrogen chlorosis reveals a genetically determined program. Current Biology 26: 2862-2872.
Kobayashi M, Katoh H, Ikeuchi M. 2006. Mutations in a putative chloride efflux transporter gene suppress the chloride requirement of photosystem II in the cytochrome c550-deficient mutant. Plant Cell Physiology 47: 799-804.
Liu XY, Hou WT, Wang L, Li B, Chen Y, Chen Y, Jiang YL, Zhou CZ. 2021. Structures of cyanobacterial bicarbonate transporter SbtA and its complex with PII-like SbtB. Cell Discovery 7: 63.
Maeda K, Okuda Y, Enomoto G, Watanabe S, Ikeuchi M. 2021. Biosynthesis of a sulfated exopolysaccharide, synechan, and bloom formation in the model cyanobacterium Synechocystis sp. strain PCC 6803. eLife 10: e66538.
Nelson JW, Sudarsan N, Furukawa K, Weinberg Z, Wang JX, Breaker RR. 2013. Riboswitches in eubacteria sense the second messenger c-di-AMP. Nature Chemical Biology 9: 834-839.
Nishimura T, Takahashi Y, Yamaguchi O, Suzuki H, Maeda SI, Omata T. 2008. Mechanism of low CO2-induced activation of the cmp bicarbonate transporter operon by a LysR family protein in the cyanobacterium Synechococcus elongatus strain PCC 7942. Molecular Microbiology 68: 98-109.
Oren N, Timm S, Frank M, Mantovani O, Murik O, Hagemann M. 2021. Red/far-red light signals regulate the activity of the carbon-concentrating mechanism in cyanobacteria. Science Advances 7: eabg0435.
Orf I, Schwarz D, Kaplan A, Kopka J, Hess WR, Hagemann M, Klähn S. 2016a. CyAbrB2 contributes to the transcriptional regulation of low CO2 acclimation in Synechocystis sp. PCC 6803. Plant and Cell Physiology 57: 2232-2243.
Orf I, Timm S, Bauwe H, Fernie AR, Hagemann M, Kopka J, Nikoloski Z. 2016b. Can cyanobacteria serve as a model of plant photorespiration? - a comparative analysis of metabolite profiles. Journal of Experimental Botany 67: 2941-2952.
Rae BD, Long BM, Badger MR, Price GD. 2013. Functions, compositions, and evolution of the two types of carboxysomes: polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria. Microbiology Molecular Biology Reviews 77: 357-379.
Raven JA, Beardall J, Sánchez-Baracaldo P. 2017. The possible evolution and future of CO2-concentrating mechanisms. Journal of Experimental Botany 68: 3701-3716.
Reinholdt O, Schwab S, Zhang Y, Reichheld JP, Fernie AR, Hagemann M, Timm S. 2019. Redox-regulation of photorespiration through mitochondrial thioredoxin. Plant Physiology 181: 442-457.
Rippka R, Deruelles J, Waterbury JB, Herdman M, Stanier RY. 1979. Generic assignments, strain histories and properties of pure cultures of cyanobacteria. Journal of General Microbiology 111: 1-61.
Rubin BE, Huynh TN, Welkie DG, Diamond S, Simkovsky R, Pierce EC, Taton A, Lowe LC, Lee JJ, Rifkin SA et al. 2018. High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival. PLoS Genetics 14: e1007301.
Schwarz D, Orf I, Kopka J, Hagemann M. 2014. Effects of inorganic carbon limitation on the metabolome of the Synechocystis sp. PCC 6803 mutant defective in glnB encoding the central regulator PII of cyanobacterial C/N acclimation. Metabolites 4: 232-247.
Selim KA, Haase F, Hartmann MD, Hagemann M, Forchhammer K. 2018. PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response. Proceedings of the National Academy of Sciences, USA 115: E4861-E4869.
Selim KA, Haffner M, Burkhardt M, Mantovani O, Neumann N, Albrecht R, Seifert R, Krüger L, Stülke J, Hartmann MD et al. 2021. Diurnal oscillation of cyanobacteria requires perception of second messenger signaling molecule c-di-AMP by the carbon-control protein SbtB. Science Advances 7: eabk0568.
Sigalat C, de Kouchkovsky Y. 1975. Fractionnement et characterisation de l’appareil photosynthetique de l’algue bleue unicellulaire Anacystis nidulans. I. Obtention de fractions par lyse osmotique et analyse pigmentaire. Physiologie Végétale 13: 243-258.
Song K, Baumgartner D, Hagemann M, Muro-Pastor AM, Maaß S, Becher D, Hess WRH. 2022. AtpΘ is an inhibitor of F0F1 ATP synthase to arrest ATP hydrolysis during low-energy conditions in cyanobacteria. Current Biology 32: 136-148.
Spät P, Barske T, Maček B, Hagemann M. 2021. Alterations in the CO2 availability induce alterations in the phospho-proteome of the cyanobacterium Synechocystis sp. PCC 6803. New Phytologist 231: 1123-1137.
Stülke J, Krüger L. 2020. Cyclic di-AMP signaling in bacteria. Annual Reviews in Microbiology 74: 159-179.
Tamoi M, Kurotaki H, Fukamizo T. 2007. Beta-1,4-glucanase-like protein from the cyanobacterium Synechocystis PCC6803 is a beta-1,3-1,4-glucanase and functions in salt stress tolerance. Biochemical Journal 405: 139-146.
Tcherkez GGB, Farquhar GD, Andrews TJ. 2006. Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized. Proceedings of the National Academy of Sciences, USA 103: 7246-7251.
Terauchi K, Ohmori M. 1999. An adenylate cyclase, Cya1, regulates cell motility in the cyanobacterium Synechocystis sp. PCC 6803. Plant and Cell Physiology 40: 248-251.
Wang HL, Postier BL, Burnap RL. 2004. Alterations in global patterns of gene expression in Synechocystis sp. PCC 6803 in response to inorganic carbon limitation and the inactivation of ndhR, a LysR family regulator. Journal of Biological Chemistry 279: 5739-5751.
Yoshimura H, Hisabori T, Yanagisawa S, Ohmori M. 2000. Identification and characterization of a novel cAMP receptor protein in the cyanobacterium Synechocystis sp. PCC 6803. Journal of Biological Chemistry 275: 6241-6245.
Yoshimura H, Yanagisawa S, Kanehisa M, Ohmori M. 2002. Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1. Molecular Microbiology 43: 843-853.