Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae.
adaptation
gene family evolution
genomics
mustelids
positive selection
structural variation
Journal
Molecular ecology
ISSN: 1365-294X
Titre abrégé: Mol Ecol
Pays: England
ID NLM: 9214478
Informations de publication
Date de publication:
05 2022
05 2022
Historique:
revised:
06
03
2022
received:
18
11
2021
accepted:
14
03
2022
pubmed:
26
3
2022
medline:
18
5
2022
entrez:
25
3
2022
Statut:
ppublish
Résumé
Species of the mustelid subfamily Guloninae inhabit diverse habitats on multiple continents, and occupy a variety of ecological niches. They differ in feeding ecologies, reproductive strategies and morphological adaptations. To identify candidate loci associated with adaptations to their respective environments, we generated a de novo assembly of the tayra (Eira barbara), the earliest diverging species in the subfamily, and compared this with the genomes available for the wolverine (Gulo gulo) and the sable (Martes zibellina). Our comparative genomic analyses included searching for signs of positive selection, examining changes in gene family sizes and searching for species-specific structural variants. Among candidate loci associated with phenotypic traits, we observed many related to diet, body condition and reproduction. For example, for the tayra, which has an atypical gulonine reproductive strategy of aseasonal breeding, we observed species-specific changes in many pregnancy-related genes. For the wolverine, a circumpolar hypercarnivore that must cope with seasonal food scarcity, we observed many changes in genes associated with diet and body condition. All types of genomic variation examined (single nucleotide polymorphisms, gene family expansions, structural variants) contributed substantially to the identification of candidate loci. This argues strongly for consideration of variation other than single nucleotide polymorphisms in comparative genomics studies aiming to identify loci of adaptive significance.
Banques de données
Dryad
['10.5061/dryad.xgxd254hz']
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2898-2919Commentaires et corrections
Type : ErratumIn
Informations de copyright
© 2022 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.
Références
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