Developing an algorithm across integrated healthcare systems to identify a history of cancer using electronic medical records.
algorithm
cancer
electronic health records
Journal
Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800
Informations de publication
Date de publication:
14 06 2022
14 06 2022
Historique:
received:
27
10
2021
revised:
05
02
2022
accepted:
16
03
2022
pubmed:
30
3
2022
medline:
18
6
2022
entrez:
29
3
2022
Statut:
ppublish
Résumé
Tumor registries in integrated healthcare systems (IHCS) have high precision for identifying incident cancer but often miss recently diagnosed cancers or those diagnosed outside of the IHCS. We developed an algorithm using the electronic medical record (EMR) to identify people with a history of cancer not captured in the tumor registry to identify adults, aged 40-65 years, with no history of cancer. The algorithm was developed at Kaiser Permanente Colorado, and then applied to 7 other IHCS. We included tumor registry data, diagnosis and procedure codes, chemotherapy files, oncology encounters, and revenue data to develop the algorithm. Each IHCS adapted the algorithm to their EMR data and calculated sensitivity and specificity to evaluate the algorithm's performance after iterative chart review. We included data from over 1.26 million eligible people across 8 IHCS; 55 601 (4.4%) were in a tumor registry, and 44848 (3.5%) had a reported cancer not captured in a registry. The common attributes of the final algorithm at each site were diagnosis and procedure codes. The sensitivity of the algorithm at each IHCS was 90.65%-100%, and the specificity was 87.91%-100%. Relying only on tumor registry data would miss nearly half of the identified cancers. Our algorithm was robust and required only minor modifications to adapt to other EMR systems. This algorithm can identify cancer cases regardless of when the diagnosis occurred and may be useful for a variety of research applications or quality improvement projects around cancer care.
Identifiants
pubmed: 35348718
pii: 6555292
doi: 10.1093/jamia/ocac044
pmc: PMC9196704
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
1217-1224Subventions
Organisme : NCI NIH HHS
ID : HHSN2612018000211
Pays : United States
Informations de copyright
© The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.
Références
Natl Cancer Inst Monogr. 1985 May;67:49-52
pubmed: 4047150
EGEMS (Wash DC). 2014 Mar 24;2(1):1049
pubmed: 25848584
EGEMS (Wash DC). 2016 Apr 13;4(1):1209
pubmed: 27195308
J Natl Cancer Inst Monogr. 2005;(35):12-25
pubmed: 16287881
Cancer Discov. 2018 Jul;8(7):803-811
pubmed: 29907587
Med Care. 2013 Oct;51(10):e67-73
pubmed: 22531648
Int Arch Occup Environ Health. 2015 Jan;88(1):61-73
pubmed: 24599726
J Natl Cancer Inst. 1964 May;32:1161-88
pubmed: 14170126
JAMA. 2012 Nov 14;308(18):1871-80
pubmed: 23162860
Cancer. 1993 Feb 15;71(4 Suppl):1480-9
pubmed: 8431884
Am J Public Health. 2016 Sep;106(9):1573-81
pubmed: 27459450
Am J Epidemiol. 2003 Mar 15;157(6):539-45
pubmed: 12631544
Online J Public Health Inform. 2015 Jul 01;7(2):e213
pubmed: 26392844
Am J Public Health Nations Health. 1951 Mar;41(3):279-81
pubmed: 14819398
N Engl J Med. 2019 Aug 15;381(7):668-676
pubmed: 31412182
Cancer Causes Control. 2002 Sep;13(7):625-35
pubmed: 12296510
Am J Epidemiol. 1979 Sep;110(3):281-90
pubmed: 474565
J Gen Intern Med. 2006 Aug;21(8):857-61
pubmed: 16881947
JAMA. 2009 Jan 7;301(1):52-62
pubmed: 19066368