Developing an algorithm across integrated healthcare systems to identify a history of cancer using electronic medical records.


Journal

Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800

Informations de publication

Date de publication:
14 06 2022
Historique:
received: 27 10 2021
revised: 05 02 2022
accepted: 16 03 2022
pubmed: 30 3 2022
medline: 18 6 2022
entrez: 29 3 2022
Statut: ppublish

Résumé

Tumor registries in integrated healthcare systems (IHCS) have high precision for identifying incident cancer but often miss recently diagnosed cancers or those diagnosed outside of the IHCS. We developed an algorithm using the electronic medical record (EMR) to identify people with a history of cancer not captured in the tumor registry to identify adults, aged 40-65 years, with no history of cancer. The algorithm was developed at Kaiser Permanente Colorado, and then applied to 7 other IHCS. We included tumor registry data, diagnosis and procedure codes, chemotherapy files, oncology encounters, and revenue data to develop the algorithm. Each IHCS adapted the algorithm to their EMR data and calculated sensitivity and specificity to evaluate the algorithm's performance after iterative chart review. We included data from over 1.26 million eligible people across 8 IHCS; 55 601 (4.4%) were in a tumor registry, and 44848 (3.5%) had a reported cancer not captured in a registry. The common attributes of the final algorithm at each site were diagnosis and procedure codes. The sensitivity of the algorithm at each IHCS was 90.65%-100%, and the specificity was 87.91%-100%. Relying only on tumor registry data would miss nearly half of the identified cancers. Our algorithm was robust and required only minor modifications to adapt to other EMR systems. This algorithm can identify cancer cases regardless of when the diagnosis occurred and may be useful for a variety of research applications or quality improvement projects around cancer care.

Identifiants

pubmed: 35348718
pii: 6555292
doi: 10.1093/jamia/ocac044
pmc: PMC9196704
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

1217-1224

Subventions

Organisme : NCI NIH HHS
ID : HHSN2612018000211
Pays : United States

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Auteurs

Jennifer C Gander (JC)

Center for Research and Evaluation, Kaiser Permanente Georgia, Atlanta, Georgia, USA.

Mahesh Maiyani (M)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Larissa L White (LL)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Andrew T Sterrett (AT)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Brianna Güney (B)

Center for Research and Evaluation, Kaiser Permanente Georgia, Atlanta, Georgia, USA.

Pamala A Pawloski (PA)

HealthPartners Institute, Bloomington, Minnesota, USA.

Teri DeFor (T)

HealthPartners Institute, Bloomington, Minnesota, USA.

YuanYuan Olsen (Y)

HealthPartners Institute, Bloomington, Minnesota, USA.

Benjamin A Rybicki (BA)

Department of Public Health Sciences, Henry Ford Health System, Detroit, Michigan, USA.

Christine Neslund-Dudas (C)

Department of Public Health Sciences, Henry Ford Health System, Detroit, Michigan, USA.

Darsheen Sheth (D)

Department of Public Health Sciences, Henry Ford Health System, Detroit, Michigan, USA.

Richard Krajenta (R)

Department of Public Health Sciences, Henry Ford Health System, Detroit, Michigan, USA.

Devaki Purushothaman (D)

Department of Public Health Sciences, Henry Ford Health System, Detroit, Michigan, USA.

Stacey Honda (S)

Center for Integrated Healthcare, Kaiser Permanente Hawaii, Honolulu, Hawaii, USA.
Hawaii Permanente Medical Group, Kaiser Permanente Hawaii, Honolulu, Hawaii, USA.

Cyndee Yonehara (C)

Center for Integrated Healthcare, Kaiser Permanente Hawaii, Honolulu, Hawaii, USA.

Katrina A B Goddard (KAB)

Department of Translational and Applied Genomics, Center for Health Research, Kaiser Permanente Northwest, Portland, Oregon, USA.

Yolanda K Prado (YK)

Department of Translational and Applied Genomics, Center for Health Research, Kaiser Permanente Northwest, Portland, Oregon, USA.

Habibul Ahsan (H)

Institute for Population and Precision Health, University of Chicago, Chicago, Illinois, USA.

Muhammad G Kibriya (MG)

Institute for Population and Precision Health, University of Chicago, Chicago, Illinois, USA.

Briseis Aschebrook-Kilfoy (B)

Institute for Population and Precision Health, University of Chicago, Chicago, Illinois, USA.

Chun-Hung Chan (CH)

Sanford Research, Sanford Health, Sioux Falls, South Dakota, USA.

Sarah Hague (S)

Sanford Research, Sanford Health, Sioux Falls, South Dakota, USA.

Christina L Clarke (CL)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Brooke Thompson (B)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Jennifer Sawyer (J)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

Mia M Gaudet (MM)

Trans Divisional Research Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.

Heather Spencer Feigelson (HS)

Institute for Health Research, Kaiser Permanente Colorado, Aurora, Colorado, USA.

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