Convergent evolution in two bacterial replicative helicase loaders.


Journal

Trends in biochemical sciences
ISSN: 0968-0004
Titre abrégé: Trends Biochem Sci
Pays: England
ID NLM: 7610674

Informations de publication

Date de publication:
07 2022
Historique:
received: 11 10 2021
revised: 06 02 2022
accepted: 08 02 2022
pubmed: 31 3 2022
medline: 15 6 2022
entrez: 30 3 2022
Statut: ppublish

Résumé

Dedicated loader proteins play essential roles in bacterial DNA replication by opening ring-shaped DnaB-family helicases and chaperoning single-stranded (ss)DNA into a central motor chamber as a prelude to DNA unwinding. Although unrelated in sequence, the Escherichia coli DnaC and bacteriophage λ P loaders feature a similar overall architecture: a globular domain linked to an extended lasso/grappling hook element, located at their N and C termini, respectively. Both loaders remodel a closed DnaB ring into nearly identical right-handed open conformations. The sole element shared by the loaders is a single alpha helix, which binds to the same site on the helicase. Physical features of the loaders establish that DnaC and λ P evolved independently to converge, through molecular mimicry, on a common helicase-opening mechanism.

Identifiants

pubmed: 35351361
pii: S0968-0004(22)00042-1
doi: 10.1016/j.tibs.2022.02.005
pmc: PMC9189051
mid: NIHMS1793074
pii:
doi:

Substances chimiques

Bacterial Proteins 0
DNA, Single-Stranded 0
Escherichia coli Proteins 0
DNA Helicases EC 3.6.4.-
DnaB Helicases EC 3.6.4.12

Types de publication

Journal Article Review Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

620-630

Subventions

Organisme : NIGMS NIH HHS
ID : R01 GM084162
Pays : United States
Organisme : NIGMS NIH HHS
ID : R37 GM071747
Pays : United States

Informations de copyright

Copyright © 2022 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests None declared by authors.

Références

Front Microbiol. 2015 Jan 06;5:735
pubmed: 25610430
J Biol Chem. 1989 Feb 15;264(5):2463-8
pubmed: 2536712
Nat Rev Mol Cell Biol. 2002 Nov;3(11):826-35
pubmed: 12415300
Sci Adv. 2016 Apr 22;2(4):e1501914
pubmed: 27152358
Brief Bioinform. 2019 Jul 19;20(4):1114-1124
pubmed: 29329409
Mol Cell. 2010 Jan 15;37(1):90-101
pubmed: 20129058
Nat Commun. 2016 Nov 10;7:13271
pubmed: 27830752
Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E697-E706
pubmed: 28096349
Science. 2007 Oct 19;318(5849):459-63
pubmed: 17947583
Microbiol Mol Biol Rev. 2018 Jun 13;82(3):
pubmed: 29898897
Crit Rev Biochem Mol Biol. 2021 Dec;56(6):621-639
pubmed: 34404299
J Biol Chem. 1997 Nov 7;272(45):28800-13
pubmed: 9353352
Nucleic Acids Res. 2014;42(16):10538-49
pubmed: 25159619
Wiley Interdiscip Rev RNA. 2011 Sep-Oct;2(5):647-68
pubmed: 21823227
Front Microbiol. 2019 Aug 29;10:2009
pubmed: 31555240
Crit Rev Biochem Mol Biol. 2008 May-Jun;43(3):163-87
pubmed: 18568846
J Biol Chem. 1996 Aug 2;271(31):18535-42
pubmed: 8702501
Curr Opin Microbiol. 2014 Dec;22:120-6
pubmed: 25460805
J Struct Biol. 2004 Apr-May;146(1-2):11-31
pubmed: 15037234
Front Microbiol. 2018 Feb 28;9:319
pubmed: 29541066
J Biochem. 2020 Jan 1;167(1):1-14
pubmed: 31665315
Nucleic Acids Res. 1984 Apr 11;12(7):3069-88
pubmed: 6326050
EMBO J. 2002 Jun 17;21(12):3148-59
pubmed: 12065427
FEMS Microbiol Rev. 2006 May;30(3):321-81
pubmed: 16594962
Biochemistry. 2004 Aug 31;43(34):10988-1001
pubmed: 15323558
Cell. 2008 Nov 14;135(4):623-34
pubmed: 19013274
Res Microbiol. 2020 Dec;171(8):287-289
pubmed: 33245995
Nucleic Acids Res. 2021 Jun 21;49(11):6569-6586
pubmed: 34107018
Archaea. 2016 Sep 14;2016:9294307
pubmed: 27703410
Biopolymers. 2016 Aug;105(8):532-46
pubmed: 26918303
Nucleic Acids Res. 1983 Nov 11;11(21):7435-52
pubmed: 6316261
J Biol Chem. 2010 Sep 3;285(36):28229-39
pubmed: 20595381
mBio. 2015 Jul 28;6(4):e00973
pubmed: 26220967
Genetics. 2005 Apr;169(4):1799-806
pubmed: 15716497
Elife. 2021 May 26;10:
pubmed: 34036936
Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1154-9
pubmed: 9037022
Front Microbiol. 2018 Nov 26;9:2819
pubmed: 30534115
Nat Rev Mol Cell Biol. 2020 Jan;21(1):43-58
pubmed: 31754261
J Bacteriol. 2017 Jun 13;199(13):
pubmed: 28320884
PLoS Genet. 2018 May 24;14(5):e1007426
pubmed: 29795553
J Biol Chem. 1998 Dec 18;273(51):34255-62
pubmed: 9852089
J Mol Biol. 2003 Oct 31;333(4):781-815
pubmed: 14568537
Enzymes. 2016;39:31-88
pubmed: 27241927
Crit Rev Biochem Mol Biol. 2016 May-Jun;51(3):135-49
pubmed: 27160337
Biochemistry. 2002 Jul 16;41(28):8907-20
pubmed: 12102633
Nucleic Acids Res. 1993 Jun 11;21(11):2541-7
pubmed: 8332451
Cell. 2012 Oct 12;151(2):267-77
pubmed: 23022319
J Biol Chem. 1987 Sep 25;262(27):13163-7
pubmed: 2958451
Curr Opin Struct Biol. 2019 Dec;59:195-204
pubmed: 31630057
Proc Natl Acad Sci U S A. 1986 Oct;83(20):7638-42
pubmed: 3020552
Nature. 2004 Jun 17;429(6993):724-30
pubmed: 15201901
Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):E4188-96
pubmed: 26195759
Proc Natl Acad Sci U S A. 1985 Jul;82(14):4678-82
pubmed: 2991888
Annu Rev Microbiol. 2020 Sep 8;74:65-80
pubmed: 32503372
Cell. 1998 Sep 4;94(5):573-83
pubmed: 9741622
Cell. 1995 Mar 10;80(5):695-705
pubmed: 7534214
Mol Cell. 2019 Apr 4;74(1):173-184.e4
pubmed: 30797687
Mol Microbiol. 2005 Feb;55(4):1138-50
pubmed: 15686560
Biochem Soc Trans. 2011 Jan;39(1):163-8
pubmed: 21265766
Genome Biol Evol. 2017 Jun 1;9(6):1561-1566
pubmed: 28854626
Nucleic Acids Res. 2016 Jan 8;44(1):210-20
pubmed: 26420830
Nat Struct Mol Biol. 2008 Jan;15(1):57-64
pubmed: 18157151
Nat Rev Microbiol. 2007 May;5(5):343-54
pubmed: 17435790
Nat Struct Mol Biol. 2008 Jan;15(1):94-100
pubmed: 18157148
Microbiol Spectr. 2014 Dec;2(6):
pubmed: 26104462
J Biol Chem. 2017 Dec 22;292(51):20871-20882
pubmed: 29070678
Science. 2017 Feb 24;355(6327):
pubmed: 28209641
Nucleic Acids Res. 2006;34(18):5247-58
pubmed: 17003052
Cold Spring Harb Perspect Biol. 2013 Jun 01;5(6):
pubmed: 23613349
J Biol Chem. 1989 Feb 15;264(5):2853-61
pubmed: 2536726
J Biol Chem. 1989 Jun 25;264(18):10719-25
pubmed: 2525130
Cell. 2009 May 15;137(4):659-71
pubmed: 19450514
Cell Syst. 2021 Jan 20;12(1):82-91.e3
pubmed: 33053371
Cell. 2013 Apr 11;153(2):438-48
pubmed: 23562643
Cell. 2003 Aug 22;114(4):521-30
pubmed: 12941279
Genome Res. 2000 Jan;10(1):5-16
pubmed: 10645945
Nucleic Acids Res. 2018 Nov 2;46(19):10145-10156
pubmed: 30184118
Nucleic Acids Res. 2020 Nov 4;48(19):11016-11029
pubmed: 33035310
Mol Cell. 2013 Dec 26;52(6):844-54
pubmed: 24373746
Science. 2011 Dec 23;334(6063):1675-80
pubmed: 22194570
Front Microbiol. 2017 Oct 09;8:1938
pubmed: 29062305
Front Mol Biosci. 2016 Aug 11;3:39
pubmed: 27563644
Curr Opin Struct Biol. 2013 Feb;23(1):144-53
pubmed: 23266000
Adv Exp Med Biol. 2017;1042:189-205
pubmed: 29357059
Nucleic Acids Res. 2017 Apr 20;45(7):3724-3737
pubmed: 28031373
Crit Rev Biochem Mol Biol. 2022 Apr;57(2):156-187
pubmed: 34632886
Antibiotics (Basel). 2018 Mar 14;7(1):
pubmed: 29538288
Front Microbiol. 2021 Sep 20;12:732270
pubmed: 34616385
Front Microbiol. 2015 Jun 02;6:545
pubmed: 26082765
Elife. 2019 Jul 08;8:
pubmed: 31282859
J Biol Chem. 1987 Jun 5;262(16):7831-8
pubmed: 3034907
Elife. 2018 Dec 24;7:
pubmed: 30582519
Proc Natl Acad Sci U S A. 2020 Jul 28;117(30):17747-17756
pubmed: 32669428
Adv Exp Med Biol. 2017;1042:207-228
pubmed: 29357060
Proc Natl Acad Sci U S A. 1982 Oct;79(20):6176-80
pubmed: 6216478
Adv Exp Med Biol. 2017;1042:79-98
pubmed: 29357054
Cell. 2001 Mar 9;104(5):791-800
pubmed: 11257232
Enzymes. 2016;39:1-30
pubmed: 27241926
Mol Cell. 2003 Apr;11(4):1009-20
pubmed: 12718886
J Bacteriol. 2020 Feb 25;202(6):
pubmed: 31907204
Curr Opin Struct Biol. 2015 Jun;32:91-101
pubmed: 25863584
Nucleic Acids Res. 1999 Sep 1;27(17):3389-401
pubmed: 10446225
Biochimie. 2005 Sep-Oct;87(9-10):835-45
pubmed: 15925436
Annu Rev Biophys Biomol Struct. 2006;35:93-114
pubmed: 16689629
J Biol Chem. 1989 Feb 15;264(5):2469-75
pubmed: 2536713
J Biol Chem. 1990 Aug 5;265(22):13297-307
pubmed: 2165499
Protein Sci. 2020 Feb;29(2):407-419
pubmed: 31599052
JSM Biochem Mol Biol. 2016;3(1):
pubmed: 28042596
Nat Commun. 2019 Jan 3;10(1):31
pubmed: 30604765
Nucleic Acids Res. 2021 Nov 8;49(19):11119-11133
pubmed: 34643717
Front Microbiol. 2018 Aug 07;9:1833
pubmed: 30131796
J Biol Chem. 1989 Jun 25;264(18):10709-18
pubmed: 2543679
J Biol Chem. 1994 Feb 18;269(7):4883-90
pubmed: 8106460
Nat Struct Mol Biol. 2018 Feb;25(2):122-130
pubmed: 29379175
J Biol Chem. 1989 Jun 25;264(18):10699-708
pubmed: 2525129
Nat Commun. 2020 Feb 4;11(1):688
pubmed: 32019936
Curr Biol. 2003 Aug 5;13(15):R594-6
pubmed: 12906810
Cell Host Microbe. 2013 Jul 17;14(1):63-73
pubmed: 23870314

Auteurs

Jillian Chase (J)

Department of Chemistry and Biochemistry, City College of New York, New York, NY 10031, USA; PhD Program in Biochemistry, The Graduate Center of the City University of New York, New York, NY 10016, USA.

James Berger (J)

Department of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA. Electronic address: jmberger@jhmi.edu.

David Jeruzalmi (D)

Department of Chemistry and Biochemistry, City College of New York, New York, NY 10031, USA; PhD Program in Biochemistry, The Graduate Center of the City University of New York, New York, NY 10016, USA; PhD Program in Biology, The Graduate Center of the City University of New York, New York, NY 10016, USA; PhD Program in Chemistry, The Graduate Center of the City University of New York, New York, NY 10016, USA. Electronic address: dj@ccny.cuny.edu.

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