V
Complementarity Determining Regions
antibodies
deep learning
docking
frameworks
homology and comparative modelling
secondary structure
sequence–structure relationship
single-domain antibody
threading
Journal
International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791
Informations de publication
Date de publication:
28 Mar 2022
28 Mar 2022
Historique:
received:
25
02
2022
revised:
23
03
2022
accepted:
23
03
2022
entrez:
12
4
2022
pubmed:
13
4
2022
medline:
14
4
2022
Statut:
epublish
Résumé
V
Identifiants
pubmed: 35409081
pii: ijms23073721
doi: 10.3390/ijms23073721
pmc: PMC8998791
pii:
doi:
Substances chimiques
Antibodies
0
Immunoglobulin Heavy Chains
0
Types de publication
Journal Article
Review
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : POE FEDER 2014-20 of the Conseil Régional de La Réunion, H2020
ID : S3D VHH program, N° SYNERGIE RE0022962
Organisme : Agence Nationale de la Recherche
ID : IdEx ANR-18-IDEX-0001
Organisme : Agence Nationale de la Recherche
ID : ANR-11-LABX-0051
Organisme : Agence Nationale de la Recherche
ID : ANR-11-IDEX-0005-02
Organisme : Indo-French Centre for the Promotion of Advanced Research
ID : 5302-2
Organisme : Agence Nationale de la Recherche
ID : ANR-19-CE17-0021 (BASIN)
Références
Proteins. 2016 Sep;84 Suppl 1:51-66
pubmed: 26677002
Proteins. 2009;77 Suppl 9:89-99
pubmed: 19701941
Cell Mol Life Sci. 2010 Oct;67(19):3371-87
pubmed: 20458517
J Comput Chem. 2005 Dec;26(16):1701-18
pubmed: 16211538
BMC Genomics. 2017 Oct 17;18(1):797
pubmed: 29041922
Nature. 2020 Dec;588(7837):203-204
pubmed: 33257889
Toxins (Basel). 2016 Apr 01;8(4):99
pubmed: 27043627
Eur Biophys J. 2011 Jul;40(7):843-56
pubmed: 21533652
Int J Mol Sci. 2020 Feb 17;21(4):
pubmed: 32079309
Anal Methods. 2020 Oct 21;12(39):4742-4748
pubmed: 32924033
J Biotechnol. 2021 Sep 20;339:22-31
pubmed: 34311028
Bioinformatics. 2005 Apr 1;21(7):951-60
pubmed: 15531603
Nat Commun. 2022 Jan 10;13(1):155
pubmed: 35013189
Front Immunol. 2021 May 05;12:626616
pubmed: 34025638
Biomedicines. 2020 Aug 31;8(9):
pubmed: 32878258
Protein Sci. 2019 Oct;28(10):1909-1912
pubmed: 31342597
Nucleic Acids Res. 2015 Jan;43(Database issue):D432-8
pubmed: 25392411
J Mol Biol. 2011 Feb 18;406(2):228-56
pubmed: 21035459
PLoS Comput Biol. 2021 Jan 28;17(1):e1008667
pubmed: 33507980
Acta Neuropathol. 2009 Nov;118(5):685-95
pubmed: 19597828
J Biol Chem. 2015 Feb 13;290(7):4022-37
pubmed: 25538244
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W526-31
pubmed: 15215442
Vaccines (Basel). 2020 Jul 28;8(3):
pubmed: 32731461
Nat Protoc. 2009;4(3):363-71
pubmed: 19247286
Am J Med Sci. 2002 Jul;324(1):14-30
pubmed: 12120821
Ann Med. 2009;41(5):322-31
pubmed: 19234897
Adv Biophys. 1976;:65-113
pubmed: 1015397
Curr Protoc Bioinformatics. 2016 Jun 20;54:5.6.1-5.6.37
pubmed: 27322406
Nature. 1993 Jun 3;363(6428):446-8
pubmed: 8502296
Anal Bioanal Chem. 2016 Sep;408(22):5985-6002
pubmed: 27209591
J Mol Biol. 1999 Apr 9;287(4):797-815
pubmed: 10191147
Antibodies (Basel). 2022 Jan 30;11(1):
pubmed: 35225868
Nat Med. 2021 Oct;27(10):1666-1669
pubmed: 34642488
Methods Mol Biol. 2022;2446:513-530
pubmed: 35157291
N Engl J Med. 2019 Jan 24;380(4):335-346
pubmed: 30625070
PeerJ. 2020 Mar 6;8:e8408
pubmed: 32185102
J Comput Chem. 2008 Jul 15;29(9):1460-5
pubmed: 18196502
J Immunother Cancer. 2021 Jun;9(6):
pubmed: 34172514
J Biol Chem. 2012 Jan 13;287(3):1970-9
pubmed: 22128183
Nat Protoc. 2015 Jun;10(6):845-58
pubmed: 25950237
Cell Rep Methods. 2021 Jul 26;1(3):
pubmed: 34355210
Methods Mol Biol. 2019;1851:367-380
pubmed: 30298409
PLoS One. 2021 Jul 23;16(7):e0254944
pubmed: 34297759
Proteins. 2014 Aug;82(8):1636-45
pubmed: 24777752
J Mol Biol. 1993 Dec 5;234(3):779-815
pubmed: 8254673
Bioinformatics. 2019 Nov 1;35(22):4862-4865
pubmed: 31116374
Proteins. 2019 Dec;87(12):1149-1164
pubmed: 31365149
Nat Struct Mol Biol. 2021 Oct;28(10):771-772
pubmed: 34561631
Mol Ther. 2016 May;24(5):890-902
pubmed: 26775809
J Biol Chem. 2021 Jan-Jun;296:100742
pubmed: 33957126
Proteins. 2015 Apr;83(4):681-95
pubmed: 25641019
Methods Mol Biol. 2012;857:301-11
pubmed: 22323227
Phys Chem Chem Phys. 2018 Jan 31;20(5):3438-3444
pubmed: 29328338
Science. 2021 Aug 20;373(6557):871-876
pubmed: 34282049
Annu Rev Biophys Biophys Chem. 1987;16:139-59
pubmed: 2439094
Nucleic Acids Res. 2016 Jul 8;44(W1):W430-5
pubmed: 27112573
Proteins. 2007;69 Suppl 8:57-67
pubmed: 17894330
Methods Mol Biol. 2014;1137:17-27
pubmed: 24573471
Immunology. 2020 Sep;161(1):53-65
pubmed: 32506493
J Mol Biol. 2021 Oct 1;433(20):167088
pubmed: 34087198
Nat Struct Mol Biol. 2018 Feb;25(2):115-121
pubmed: 29396418
Proteins. 2017 Jan;85(1):30-38
pubmed: 27717001
Acta Crystallogr F Struct Biol Commun. 2017 May 1;73(Pt 5):286-293
pubmed: 28471361
Proteins. 2014 Aug;82(8):1599-610
pubmed: 24715627
Immunol Cell Biol. 2011 Feb;89(2):225-30
pubmed: 20567249
Biophys J. 2011 Nov 16;101(10):2525-34
pubmed: 22098752
PeerJ. 2017 Nov 20;5:e4013
pubmed: 29177113
Methods Enzymol. 2004;383:66-93
pubmed: 15063647
Protein Sci. 2006 Nov;15(11):2507-24
pubmed: 17075131
Pharmacol Res. 2020 Jun;156:104790
pubmed: 32278043
Bioinformatics. 2002;18 Suppl 1:S54-61
pubmed: 12169531
Proteins. 2014 Feb;82 Suppl 2:57-83
pubmed: 24343678
Nat Protoc. 2010 Apr;5(4):725-38
pubmed: 20360767
Anal Biochem. 2015 May 15;477:92-4
pubmed: 25707320
Trans R Soc Trop Med Hyg. 2014 Feb;108(2):92-8
pubmed: 24463583
Sci Rep. 2018 Dec 4;8(1):17611
pubmed: 30514850
Front Immunol. 2022 Feb 24;13:822159
pubmed: 35281053
MAbs. 2022 Jan-Dec;14(1):2018960
pubmed: 35014603
Proteins. 2003 Feb 15;50(3):437-50
pubmed: 12557186
Biomolecules. 2021 Feb 08;11(2):
pubmed: 33567640
Proteins. 2004 Dec 1;57(4):702-10
pubmed: 15476259
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W96-9
pubmed: 15215358
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
pubmed: 10592235
Front Immunol. 2018 Feb 19;9:273
pubmed: 29520274
Dev Comp Immunol. 2006;30(1-2):187-98
pubmed: 16051357
Nat Methods. 2015 Jan;12(1):7-8
pubmed: 25549265
Proteins. 2021 Nov;89(11):1458-1472
pubmed: 34176159
Pharmaceuticals (Basel). 2021 Sep 24;14(10):
pubmed: 34681192
PLoS One. 2021 Mar 25;16(3):e0234282
pubmed: 33764990
J Hum Genet. 2020 Jan;65(1):61-67
pubmed: 31451715
Biochimie. 2016 Dec;131:11-19
pubmed: 27613403
iScience. 2022 Mar 18;25(3):103960
pubmed: 35224467
Methods. 2000 Mar;20(3):267-79
pubmed: 10694450
Patterns (N Y). 2021 Dec 09;3(2):100406
pubmed: 35199061
Methods Enzymol. 1991;203:121-53
pubmed: 1762554
Proteins. 2018 Jul;86(7):697-706
pubmed: 29569425
J Mol Recognit. 2003 May-Jun;16(3):113-20
pubmed: 12833565
Front Immunol. 2021 May 28;12:690742
pubmed: 34122456
Biotechnol Appl Biochem. 2007 Jan;46(Pt 1):41-9
pubmed: 16848761
Cell. 2020 May 28;181(5):1004-1015.e15
pubmed: 32375025
Mol Immunol. 2008 Aug;45(14):3832-9
pubmed: 18614234
FEBS J. 2021 Mar 9;:
pubmed: 33751827
Bioinformatics. 1999 Dec;15(12):1000-11
pubmed: 10745990
BioDrugs. 2020 Feb;34(1):11-26
pubmed: 31686399
MAbs. 2015;7(5):838-52
pubmed: 26176812
Phys Chem Chem Phys. 2020 Feb 26;22(8):4343-4367
pubmed: 32067019
Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1496-1503
pubmed: 31896580
Nucleic Acids Res. 2022 Jan 7;50(D1):D1273-D1281
pubmed: 34747487
Nat Struct Mol Biol. 2020 Sep;27(9):846-854
pubmed: 32661423
Biochimie. 1990 Aug;72(8):513-24
pubmed: 2126456
MAbs. 2010 Mar-Apr;2(2):129-36
pubmed: 20190561
Proteins. 2021 Dec;89(12):1711-1721
pubmed: 34599769
Viruses. 2015 Apr 20;7(4):2030-56
pubmed: 25903832
Proteins. 2018 Mar;86 Suppl 1:283-291
pubmed: 28913931
Methods Enzymol. 1991;202:239-52
pubmed: 1784176
Proteins. 2017 Sep;85(9):1759-1776
pubmed: 28598579
Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):701-9
pubmed: 23633579
Nat Methods. 2014 Dec;11(12):1253-60
pubmed: 25362362
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Chem Sci. 2021 Jul 12;12(32):10836-10847
pubmed: 34476063
PLoS One. 2010 May 05;5(5):e10482
pubmed: 20463957
Blood. 2017 Dec 7;130(23):2463-2468
pubmed: 29042366
Proteins. 2014 Aug;82(8):1583-98
pubmed: 24833271
Proc Natl Acad Sci U S A. 1989 Dec;86(23):9268-72
pubmed: 2594766
Cell. 2018 Jan 11;172(1-2):55-67.e15
pubmed: 29307491
J Mol Biol. 2021 May 28;433(11):166882
pubmed: 33972018
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W210-4
pubmed: 21576220
Mol Immunol. 2019 Oct;114:651-660
pubmed: 31557626
Science. 2021 Feb 12;371(6530):
pubmed: 33436526
PLoS One. 2012;7(11):e49254
pubmed: 23145135
J Biol Chem. 1983 Dec 10;258(23):14433-7
pubmed: 6643494
Antibodies (Basel). 2020 Oct 13;9(4):
pubmed: 33066119
J Biol Chem. 2010 Mar 26;285(13):9657-9666
pubmed: 20093370
Bioinformatics. 2006 Jan 15;22(2):188-94
pubmed: 16278239
Nucleic Acids Res. 2003 Jul 1;31(13):3381-5
pubmed: 12824332
Proteins. 2014 Feb;82 Suppl 2:175-87
pubmed: 23760925
Nat Commun. 2021 Aug 18;12(1):5011
pubmed: 34408149
Proteins. 2019 Dec;87(12):1141-1148
pubmed: 31602685
J Comput Chem. 2004 Apr 30;25(6):865-71
pubmed: 15011258
Acta Crystallogr D Biol Crystallogr. 2002 Jun;58(Pt 6 No 1):899-907
pubmed: 12037327
Brief Bioinform. 2019 Sep 27;20(5):1878-1912
pubmed: 30084866
J Bioinform Comput Biol. 2003 Apr;1(1):95-117
pubmed: 15290783
PLoS Comput Biol. 2017 Jan 5;13(1):e1005324
pubmed: 28056090
Postepy Hig Med Dosw (Online). 2012 Jun 14;66:348-58
pubmed: 22706121
Bioinformatics. 2008 Sep 1;24(17):1953-4
pubmed: 18641403
Proc Natl Acad Sci U S A. 2020 May 19;117(20):10848-10855
pubmed: 32371486
Proteins. 2009 Feb 1;74(2):497-514
pubmed: 19062174
Antibodies (Basel). 2019 Jun 03;8(2):
pubmed: 31544842
Anal Biochem. 2016 May 1;500:66-72
pubmed: 26450565
Science. 2020 Dec 18;370(6523):1479-1484
pubmed: 33154108
Immunol Rev. 1998 Dec;166:103-22
pubmed: 9914906
Drug Discov Today. 2016 Jul;21(7):1076-113
pubmed: 27080147
Protein Sci. 2018 Jan;27(1):26-40
pubmed: 28766807
Nature. 2020 Jan;577(7792):706-710
pubmed: 31942072
Cold Spring Harb Symp Quant Biol. 1987;52:91-6
pubmed: 3454298
PLoS One. 2016 Mar 30;11(3):e0151363
pubmed: 27028872
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W407-10
pubmed: 17517781
Proteins. 1999;Suppl 3:171-6
pubmed: 10526365
Nature. 2021 Jul;595(7866):278-282
pubmed: 34098567
Nat Biotechnol. 1996 Mar;14(3):323-8
pubmed: 9630894
Chirality. 2008 Mar;20(3-4):559-70
pubmed: 18172831
Proteins. 2000 Nov 15;41(3):271-87
pubmed: 11025540
Nat Commun. 2021 Aug 3;12(1):4676
pubmed: 34344900
Genomics Proteomics Bioinformatics. 2018 Feb;16(1):17-32
pubmed: 29522900
Semin Immunol. 2021 Feb;52:101425
pubmed: 33272897
Nucleic Acids Res. 2017 Jul 3;45(W1):W17-W23
pubmed: 28472367
PLoS One. 2011;6(8):e22477
pubmed: 21829626
Nature. 1977 Aug 25;268(5622):765-6
pubmed: 895880
Exp Clin Immunogenet. 1999;16(1):36-60
pubmed: 10087405
J Immunol. 2011 Jun 1;186(11):6357-67
pubmed: 21525384
Microbiol Spectr. 2014 Apr;2(2):
pubmed: 26105823
Int J Mol Sci. 2021 Sep 09;22(18):
pubmed: 34575931
Sci Rep. 2016 Jun 20;6:28268
pubmed: 27319297
Bioinformatics. 2020 Mar 1;36(6):1765-1771
pubmed: 31697312
Pharmacol Ther. 2013 Jun;138(3):452-69
pubmed: 23507041
Toxins (Basel). 2012 Jul;4(7):554-67
pubmed: 22852068
Transfus Clin Biol. 2010 Sep;17(3):184-96
pubmed: 20655787
Nat Commun. 2020 Sep 4;11(1):4420
pubmed: 32887876
Science. 2001 Oct 5;294(5540):93-6
pubmed: 11588250
J Immunoassay Immunochem. 2018;39(4):351-364
pubmed: 30204067
Elife. 2018 May 24;7:
pubmed: 29792401
J Biomol Struct Dyn. 2020 Jul;38(10):2988-3002
pubmed: 31361191
J Cheminform. 2020 Aug 31;12(1):49
pubmed: 33431033
Proteins. 2005;61 Suppl 7:128-34
pubmed: 16187354
Proteins. 1993 Dec;17(4):355-62
pubmed: 8108378
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W252-8
pubmed: 24782522
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2021 Jul;13(4):e1697
pubmed: 33470555
Mol Cancer Ther. 2015 Nov;14(11):2527-40
pubmed: 26351325
Anal Biochem. 2020 Jan 15;589:113491
pubmed: 31676284
Nat Methods. 2011 Dec 25;9(2):173-5
pubmed: 22198341
Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303
pubmed: 29788355
Methods Mol Biol. 2012;911:305-24
pubmed: 22886260
Foods. 2021 Oct 13;10(10):
pubmed: 34681475
Trends Cancer. 2021 Feb;7(2):162-173
pubmed: 33041246
PLoS One. 2018 Jan 11;13(1):e0191162
pubmed: 29324815
J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048
pubmed: 28430426
Bioinformatics. 2020 Apr 1;36(7):2105-2112
pubmed: 31738385
J Mol Biol. 2000 Aug 4;301(1):173-90
pubmed: 10926500
EMBO J. 2021 Oct 1;40(19):e107985
pubmed: 34302370
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
PLoS Comput Biol. 2021 Jan 19;17(1):e1008568
pubmed: 33465067
Proteins. 2003;53 Suppl 6:579-84
pubmed: 14579349
Protein Eng. 2000 Dec;13(12):819-24
pubmed: 11239080
Protein Sci. 2019 Feb;28(2):429-438
pubmed: 30394618
Proteins. 2011 Nov;79(11):3050-66
pubmed: 21935986
PLoS Comput Biol. 2022 Jan 24;18(1):e1009818
pubmed: 35073311
Mycotoxin Res. 2022 Feb;38(1):51-60
pubmed: 35023020
Adv Exp Med Biol. 2017;1053:221-243
pubmed: 29549642
Antibodies (Basel). 2018 Jun 29;7(3):
pubmed: 31544874
Bioinformatics. 2015 Dec 1;31(23):3782-9
pubmed: 26254434
Trends Biochem Sci. 2001 Apr;26(4):230-5
pubmed: 11295555
Nucleic Acids Res. 2002 Jan 1;30(1):255-9
pubmed: 11752309
Anim Biotechnol. 2019 Jan;30(1):57-62
pubmed: 29527970
Nucleic Acids Res. 2022 Jan 7;50(D1):D1368-D1372
pubmed: 34986602
Int J Mol Sci. 2021 Aug 17;22(16):
pubmed: 34445537
Bioinformatics. 2014 Jun 15;30(12):1771-3
pubmed: 24532726
Nucleic Acids Res. 2007;35(10):3375-82
pubmed: 17478507
MAbs. 2021 Jan-Dec;13(1):1961349
pubmed: 34432559
J Biomol Struct Dyn. 2019 Sep;37(14):3686-3696
pubmed: 30241448
Vaccines (Basel). 2021 Jun 08;9(6):
pubmed: 34201329
MAbs. 2015;7(1):9-14
pubmed: 25529996
Nucleic Acids Res. 2015 Jul 1;43(W1):W349-55
pubmed: 26007650
Proteins. 2011;79 Suppl 10:161-71
pubmed: 21987485
Nucleic Acids Res. 2005 Apr 22;33(7):2302-9
pubmed: 15849316
PLoS One. 2017 May 18;12(5):e0177923
pubmed: 28542300
Proteins. 2014 Aug;82(8):1553-62
pubmed: 24668560
BMC Bioinformatics. 2009 Oct 31;10:366
pubmed: 19878598
J Mol Graph Model. 2017 Sep;76:305-312
pubmed: 28779687
Cell Host Microbe. 2020 Jun 10;27(6):891-898.e5
pubmed: 32413276
PLoS One. 2015 Feb 23;10(2):e0116472
pubmed: 25706384
Nat Commun. 2020 Dec 2;11(1):6179
pubmed: 33268786
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674
pubmed: 19461840
Nat Methods. 2020 Jul;17(7):665-680
pubmed: 32483333
Structure. 2022 Mar 3;30(3):418-429.e3
pubmed: 34895471
Int J Biol Macromol. 2015;77:222-34
pubmed: 25748850
Nat Protoc. 2012 Jul 19;7(8):1511-22
pubmed: 22814390
Appl Biochem Biotechnol. 2014 Mar;172(6):3079-91
pubmed: 24492955
Science. 2020 Dec 18;370(6523):1473-1479
pubmed: 33154106
Brief Bioinform. 2021 Jan 18;22(1):194-218
pubmed: 31867611
Bioinformatics. 2011 Feb 1;27(3):343-50
pubmed: 21134891
Mol Biotechnol. 2019 Nov;61(11):801-815
pubmed: 31468301
Nat Protoc. 2021 Dec;16(12):5634-5651
pubmed: 34759384
Biopolymers. 1987 Jan;26(1):137-68
pubmed: 3801593
Avicenna J Med Biotechnol. 2021 Apr-Jun;13(2):58-64
pubmed: 34012520
Mol Immunol. 1995 Sep;32(13):1001-10
pubmed: 7476997
J Biotechnol. 2000 Feb 28;78(1):11-21
pubmed: 10702907
Cells. 2021 May 08;10(5):
pubmed: 34066890
Structure. 2013 Oct 8;21(10):1735-42
pubmed: 24035711
J Theor Biol. 2016 May 21;397:43-51
pubmed: 26907201
Annu Rev Anim Biosci. 2021 Feb 16;9:401-421
pubmed: 33233943
Biophys Chem. 1997 Oct;68(1-3):9-16
pubmed: 9468606
Nat Protoc. 2014 Dec;9(12):2771-83
pubmed: 25375991
Biochemistry. 2021 Mar 23;60(11):825-846
pubmed: 33705117
Int J Mol Sci. 2019 Aug 27;20(17):
pubmed: 31461846
Sensors (Basel). 2018 Feb 06;18(2):
pubmed: 29415506
Cancer Cell Int. 2021 Oct 30;21(1):580
pubmed: 34717636
Front Cell Infect Microbiol. 2021 Mar 11;11:632490
pubmed: 33777844
PLoS One. 2011;6(9):e24657
pubmed: 21949741
Comput Struct Biotechnol J. 2020 Jan 22;18:1301-1310
pubmed: 32612753
J Mol Biol. 1998 Jan 16;275(2):269-94
pubmed: 9466909
J Mol Biol. 2010 Apr 16;397(5):1329-38
pubmed: 20149797
Nucleic Acids Res. 2014 Jan;42(Database issue):D336-46
pubmed: 24271400
Nat Protoc. 2017 Feb;12(2):401-416
pubmed: 28125104
F1000Res. 2019 Aug 30;8:
pubmed: 31508202
Int J Mol Sci. 2022 Feb 16;23(4):
pubmed: 35216287
Life (Basel). 2021 Dec 18;11(12):
pubmed: 34947959
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W474-9
pubmed: 19458157
Proteins. 2012 Jul;80(7):1715-35
pubmed: 22411565
Bioinformatics. 2019 May 1;35(9):1591-1593
pubmed: 30951584
FEBS Lett. 1997 Sep 15;414(3):521-6
pubmed: 9323027