Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species.

Alleles Animals Biological Evolution Male Mozambique Papio / genetics Papio ursinus / anatomy & histology
Evolutionary genetics Papio Population genomics Primate genomics

Journal

BMC ecology and evolution
ISSN: 2730-7182
Titre abrégé: BMC Ecol Evol
Pays: England
ID NLM: 101775613

Informations de publication

Date de publication:
11 04 2022
Historique:
received: 10 11 2021
accepted: 28 03 2022
entrez: 12 4 2022
pubmed: 13 4 2022
medline: 14 4 2022
Statut: epublish

Résumé

Gorongosa National Park in Mozambique hosts a large population of baboons, numbering over 200 troops. Gorongosa baboons have been tentatively identified as part of Papio ursinus on the basis of previous limited morphological analysis and a handful of mitochondrial DNA sequences. However, a recent morphological and morphometric analysis of Gorongosa baboons pinpointed the occurrence of several traits intermediate between P. ursinus and P. cynocephalus, leaving open the possibility of past and/or ongoing gene flow in the baboon population of Gorongosa National Park. In order to investigate the evolutionary history of baboons in Gorongosa, we generated high and low coverage whole genome sequence data of Gorongosa baboons and compared it to available Papio genomes. We confirmed that P. ursinus is the species closest to Gorongosa baboons. However, the Gorongosa baboon genomes share more derived alleles with P. cynocephalus than P. ursinus does, but no recent gene flow between P. ursinus and P. cynocephalus was detected when available Papio genomes were analyzed. Our results, based on the analysis of autosomal, mitochondrial and Y chromosome data, suggest complex, possibly male-biased, gene flow between Gorongosa baboons and P. cynocephalus, hinting to direct or indirect contributions from baboons belonging to the "northern" Papio clade, and signal the presence of population structure within P. ursinus. The analysis of genome data generated from baboon samples collected in central Mozambique highlighted a complex set of evolutionary relationships with other baboons. Our results provided new insights in the population dynamics that have shaped baboon diversity.

Sections du résumé

BACKGROUND
Gorongosa National Park in Mozambique hosts a large population of baboons, numbering over 200 troops. Gorongosa baboons have been tentatively identified as part of Papio ursinus on the basis of previous limited morphological analysis and a handful of mitochondrial DNA sequences. However, a recent morphological and morphometric analysis of Gorongosa baboons pinpointed the occurrence of several traits intermediate between P. ursinus and P. cynocephalus, leaving open the possibility of past and/or ongoing gene flow in the baboon population of Gorongosa National Park. In order to investigate the evolutionary history of baboons in Gorongosa, we generated high and low coverage whole genome sequence data of Gorongosa baboons and compared it to available Papio genomes.
RESULTS
We confirmed that P. ursinus is the species closest to Gorongosa baboons. However, the Gorongosa baboon genomes share more derived alleles with P. cynocephalus than P. ursinus does, but no recent gene flow between P. ursinus and P. cynocephalus was detected when available Papio genomes were analyzed. Our results, based on the analysis of autosomal, mitochondrial and Y chromosome data, suggest complex, possibly male-biased, gene flow between Gorongosa baboons and P. cynocephalus, hinting to direct or indirect contributions from baboons belonging to the "northern" Papio clade, and signal the presence of population structure within P. ursinus.
CONCLUSIONS
The analysis of genome data generated from baboon samples collected in central Mozambique highlighted a complex set of evolutionary relationships with other baboons. Our results provided new insights in the population dynamics that have shaped baboon diversity.

Identifiants

DOI: 10.1186/s12862-022-01999-7 PMID: 35410131 PMC: PMC8996594
pubmed: 35410131
doi: 10.1186/s12862-022-01999-7
pii: 10.1186/s12862-022-01999-7
pmc: PMC8996594
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

44

Informations de copyright

© 2022. The Author(s).

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Auteurs

Cindy Santander (C)

Department of Biology, University of Copenhagen, Copenhagen, Denmark. cindyg.santander@gmail.com.
Department of Zoology, University of Oxford, Oxford, UK. cindyg.santander@gmail.com.

Ludovica Molinaro (L)

Estonian Biocentre, Institute of Genomics, University of Tartu, Tartu, Estonia.

Giacomo Mutti (G)

Department of Biosciences, University of Milan, Milan, Italy.
Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.

Felipe I Martínez (FI)

Escuela de Antropología, Facultad de Ciencias Sociales, Pontificia Universidad Católica de Chile, Santiago, Chile.

Jacinto Mathe (J)

School of Anthropology, University of Oxford, Oxford, UK.

Maria Joana Ferreira da Silva (MJ)

BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, Vairão, Portugal.
CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.
ONE - Organisms and Environment Group, School of Biosciences, Cardiff University, Sir Martin Evans Building, Cardiff, UK.

Matteo Caldon (M)

Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.

Gonzalo Oteo-Garcia (G)

Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.

Vera Aldeias (V)

Interdisciplinary Center for Archaeology and Evolution of Human Behavior (ICArEHB), Universidade do Algarve, Faro, Portugal.

Will Archer (W)

Department of Archaeology, National Museum, Bloemfontein, South Africa.

Marion Bamford (M)

Evolutionary Studies Institute, University of the Witwatersrand, Johannesburg, South Africa.

Dora Biro (D)

Department of Zoology, University of Oxford, Oxford, UK.

René Bobe (R)

School of Anthropology, University of Oxford, Oxford, UK.
Gorongosa National Park, Sofala, Mozambique.

David R Braun (DR)

Center for the Advanced Study of Human Paleobiology, George Washington University, Washington, USA.

Philippa Hammond (P)

School of Anthropology, University of Oxford, Oxford, UK.

Tina Lüdecke (T)

School of Anthropology, University of Oxford, Oxford, UK.
Emmy Noether Group for Hominin Meat Consumption, Max Planck Institute for Chemistry, Mainz, Germany.

Maria José Pinto (MJ)

AESDA - Associação de Estudos Subterrâneos e Defesa do Ambiente, Lisbon, Portugal.

Luis Meira Paulo (L)

AESDA - Associação de Estudos Subterrâneos e Defesa do Ambiente, Lisbon, Portugal.

Marc Stalmans (M)

Department of Scientific Services, Gorongosa National Park, Chitengo, Sofala Province, Mozambique.

Frederico Tátá Regala (FT)

Interdisciplinary Center for Archaeology and Evolution of Human Behavior (ICArEHB), Universidade do Algarve, Faro, Portugal.

Francesco Bertolini (F)

Laboratory of Hematology-Oncology, European Institute of Oncology IRCCS, Milan, Italy.

Ida Moltke (I)

Department of Biology, University of Copenhagen, Copenhagen, Denmark.

Alessandro Raveane (A)

Laboratory of Hematology-Oncology, European Institute of Oncology IRCCS, Milan, Italy.

Luca Pagani (L)

Estonian Biocentre, Institute of Genomics, University of Tartu, Tartu, Estonia.
Department of Biology, University of Padua, Padua, Italy.

Susana Carvalho (S)

School of Anthropology, University of Oxford, Oxford, UK. susana.carvalho@anthro.ox.ac.uk.
Gorongosa National Park, Sofala, Mozambique. susana.carvalho@anthro.ox.ac.uk.

Cristian Capelli (C)

Department of Zoology, University of Oxford, Oxford, UK. cristian.capelli@unipr.it.
Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy. cristian.capelli@unipr.it.

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Classifications MeSH

questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Composants de génome › Gènes › Allèles › Genomic variation in baboons from central...
questionsmedicales.fr › Eucaryotes › Animaux › Genomic variation in baboons from central...
questionsmedicales.fr › Phénomènes biologiques › Évolution biologique › Genomic variation in baboons from central...
questionsmedicales.fr › Régions géographiques › Afrique › Afrique subsaharienne › Afrique australe › Mozambique › Genomic variation in baboons from central...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Cercopithecidae › Cercopithecinae › Papio › Genomic variation in baboons from central...
questionsmedicales.fr › Eucaryotes › Animaux › Chordés › Vertébrés › Mammifères › Eutheria › Primates › Haplorhini › Catarrhini › Cercopithecidae › Cercopithecinae › Papio › Papio ursinus › Genomic variation in baboons from central...