Identification of diffusion routes of O/EA-3 topotype of foot-and-mouth disease virus in Africa and Western Asia between 1974 and 2019 - a phylogeographic analysis.
Africa
Middle-East
foot-and-mouth disease
phylogeography
serotype O
topotype East Africa-3
transboundary
viral migration
Journal
Transboundary and emerging diseases
ISSN: 1865-1682
Titre abrégé: Transbound Emerg Dis
Pays: Germany
ID NLM: 101319538
Informations de publication
Date de publication:
Sep 2022
Sep 2022
Historique:
revised:
13
04
2022
received:
25
02
2022
accepted:
16
04
2022
pubmed:
19
4
2022
medline:
30
9
2022
entrez:
18
4
2022
Statut:
ppublish
Résumé
Foot-and-mouth disease (FMD) affects the livestock industry and socioeconomic sustainability of many African countries. The success of FMD control programs in Africa depends largely on understanding the dynamics of FMD virus (FMDV) spread. In light of the recent outbreaks of FMD that affected the North-Western African countries in 2018 and 2019, we investigated the evolutionary phylodynamics of the causative serotype O viral strains all belonging to the East-Africa 3 topotype (O/EA-3). We analyzed a total of 489 sequences encoding the FMDV VP1 genome region generated from samples collected from 25 African and Western Asian countries between 1974 and 2019. Using Bayesian evolutionary models on genomic and epidemiological data, we inferred the routes of introduction and migration of the FMDV O/EA-3 topotype at the inter-regional scale. We inferred a mean substitution rate of 6.64 × 10
Identifiants
pubmed: 35435315
doi: 10.1111/tbed.14562
pmc: PMC9795992
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
e2230-e2239Subventions
Organisme : European Commission
Organisme : Department for Environment, Food and Rural Affairs, UK Government
Informations de copyright
© 2022 The Authors. Transboundary and Emerging Diseases published by Wiley-VCH GmbH.
Références
Rev Sci Tech. 2016 Dec;35(3):741-755
pubmed: 28332654
Nat Commun. 2018 Jun 8;9(1):2222
pubmed: 29884821
Prev Vet Med. 2014 Apr 1;114(1):64-71
pubmed: 24486093
Prev Vet Med. 2013 Nov 1;112(3-4):161-73
pubmed: 23958457
Transbound Emerg Dis. 2016 Apr;63(2):136-51
pubmed: 25052411
Nature. 1966 Jun 4;210(5040):1079-80
pubmed: 4288087
Infect Genet Evol. 2014 Jan;21:408-17
pubmed: 24368254
Comp Immunol Microbiol Infect Dis. 2002 Oct;25(5-6):297-308
pubmed: 12365806
Mol Ecol. 2005 Jan;14(1):67-73
pubmed: 15643951
J Virol. 2009 Jan;83(2):781-90
pubmed: 19004952
Virus Res. 2003 Jan;91(1):65-80
pubmed: 12527438
Mol Biol Evol. 2018 Jun 1;35(6):1547-1549
pubmed: 29722887
J Clin Microbiol. 2009 Oct;47(10):3156-60
pubmed: 19656987
Front Vet Sci. 2018 Dec 14;5:320
pubmed: 30619901
Arch Virol. 2010 Oct;155(10):1625-30
pubmed: 20614146
PLoS One. 2015 Dec 02;10(12):e0143605
pubmed: 26630483
Philos Trans R Soc Lond B Biol Sci. 2009 Sep 27;364(1530):2657-67
pubmed: 19687036
BMC Evol Biol. 2017 Feb 6;17(1):42
pubmed: 28166715
Virus Genes. 1995;11(2-3):197-207
pubmed: 8828146
Syst Biol. 2019 Mar 1;68(2):219-233
pubmed: 29961836
Mol Ecol. 2004 Apr;13(4):827-36
pubmed: 15012758
J Gen Virol. 2001 Mar;82(Pt 3):609-621
pubmed: 11172103
Vet Rec. 2007 Feb 17;160(7):238-41
pubmed: 17308024
Transbound Emerg Dis. 2019 Jan;66(1):7-13
pubmed: 30222914
Transbound Emerg Dis. 2022 Sep;69(5):e2230-e2239
pubmed: 35435315
BMC Evol Biol. 2007 Nov 08;7:214
pubmed: 17996036
Rev Sci Tech. 2011 Apr;30(1):63-85
pubmed: 21809754
Emerg Infect Dis. 2005 Dec;11(12):1887-93
pubmed: 16485475
Infect Genet Evol. 2016 Jul;41:93-99
pubmed: 27074336
J Comp Pathol. 1998 Feb;118(2):89-108
pubmed: 9573506
Clin Microbiol Rev. 2004 Apr;17(2):465-93
pubmed: 15084510
R Soc Open Sci. 2017 Dec 6;4(12):170808
pubmed: 29308225
Evol Bioinform Online. 2007 Feb 12;2:227-35
pubmed: 19455215
Transbound Emerg Dis. 2020 May;67(3):1257-1270
pubmed: 31880066
Annu Rev Microbiol. 1987;41:409-33
pubmed: 3318675
Vet Res. 2013 Mar 01;44:12
pubmed: 23452550
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417
PLoS Comput Biol. 2009 Sep;5(9):e1000520
pubmed: 19779555
Arch Virol. 2013 Mar;158(3):619-27
pubmed: 23132412
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7
pubmed: 15034147
Emerg Infect Dis. 2018 Jun;24(6):1073-1078
pubmed: 29774839