HNF4A modulates glucocorticoid action in the liver.


Journal

Cell reports
ISSN: 2211-1247
Titre abrégé: Cell Rep
Pays: United States
ID NLM: 101573691

Informations de publication

Date de publication:
19 04 2022
Historique:
received: 14 04 2021
revised: 24 01 2022
accepted: 29 03 2022
entrez: 20 4 2022
pubmed: 21 4 2022
medline: 23 4 2022
Statut: ppublish

Résumé

The glucocorticoid receptor (GR) is a nuclear receptor critical to the regulation of energy metabolism and inflammation. The actions of GR are dependent on cell type and context. Here, we demonstrate the role of liver lineage-determining factor hepatocyte nuclear factor 4A (HNF4A) in defining liver specificity of GR action. In mouse liver, the HNF4A motif lies adjacent to the glucocorticoid response element (GRE) at GR binding sites within regions of open chromatin. In the absence of HNF4A, the liver GR cistrome is remodeled, with loss and gain of GR recruitment evident. Loss of chromatin accessibility at HNF4A-marked sites associates with loss of GR binding at weak GRE motifs. GR binding and chromatin accessibility are gained at sites characterized by strong GRE motifs, which show GR recruitment in non-liver tissues. The functional importance of these HNF4A-regulated GR sites is indicated by an altered transcriptional response to glucocorticoid treatment in the Hnf4a-null liver.

Identifiants

pubmed: 35443180
pii: S2211-1247(22)00455-7
doi: 10.1016/j.celrep.2022.110697
pmc: PMC9380254
pii:
doi:

Substances chimiques

Chromatin 0
Glucocorticoids 0
Hepatocyte Nuclear Factor 4 0
Hepatocyte Nuclear Factors 0
Hnf4a protein, mouse 0
Receptors, Glucocorticoid 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

110697

Subventions

Organisme : Wellcome Trust
ID : 107849/Z/15/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 107851/Z/15/Z
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/P00279X/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/P023576/2
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/N021479/1
Pays : United Kingdom

Informations de copyright

Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of interests The authors declare no competing interests.

Références

Nat Genet. 2011 Mar;43(3):264-8
pubmed: 21258342
Nat Genet. 2016 Aug;48(8):904-911
pubmed: 27376239
Mol Cell. 2013 Oct 10;52(1):25-36
pubmed: 24076218
F1000Res. 2021 Jul 15;10:570
pubmed: 34504687
Mol Biosyst. 2016 Feb;12(2):477-9
pubmed: 26661513
J Mol Endocrinol. 2019 May 1;62(4):169-177
pubmed: 30917338
Mech Dev. 2009 Dec;126(11-12):958-73
pubmed: 19766716
Genesis. 2004 Jul;39(3):167-72
pubmed: 15282742
Nucleic Acids Res. 2020 Sep 4;48(15):8393-8407
pubmed: 32619221
Mol Cell. 2019 Nov 21;76(4):531-545.e5
pubmed: 31706703
Nat Commun. 2017 Sep 15;8(1):549
pubmed: 28916805
Proc Natl Acad Sci U S A. 2020 Oct 13;117(41):25869-25879
pubmed: 32989157
Proc Natl Acad Sci U S A. 2020 Jul 21;117(29):17177-17186
pubmed: 32631996
Cell Rep. 2019 Jun 11;27(11):3215-3227.e6
pubmed: 31189106
Cell Metab. 2021 Aug 3;33(8):1685-1700.e9
pubmed: 34237252
Elife. 2022 Jan 05;11:
pubmed: 34984978
Genome Res. 2017 Mar;27(3):427-439
pubmed: 28031249
Cell Syst. 2018 Aug 22;7(2):146-160.e7
pubmed: 30031775
PLoS Biol. 2017 Apr 17;15(4):e2001069
pubmed: 28414715
Nat Commun. 2021 Mar 31;12(1):1987
pubmed: 33790284
EMBO J. 2013 May 29;32(11):1568-83
pubmed: 23665916
Bioinformatics. 2014 Aug 1;30(15):2114-20
pubmed: 24695404
Front Neuroendocrinol. 2005 Oct-Dec;26(3-4):103-8
pubmed: 16242180
J Clin Invest. 2018 Oct 1;128(10):4454-4471
pubmed: 30179226
Genome Res. 2018 Sep;28(9):1272-1284
pubmed: 30097539
Genes Dev. 2017 Jun 15;31(12):1202-1211
pubmed: 28747429
Cell Metab. 2005 Aug;2(2):141-8
pubmed: 16098831
Nat Commun. 2021 Nov 3;12(1):6350
pubmed: 34732735
Elife. 2018 Feb 09;7:
pubmed: 29424686
Cell. 2011 Apr 15;145(2):224-41
pubmed: 21496643
Genes Dev. 2019 Mar 1;33(5-6):294-309
pubmed: 30804225
F1000Res. 2015 Oct 16;4:1080
pubmed: 26834993
Nucleic Acids Res. 2016 Mar 18;44(5):e45
pubmed: 26578583
Mol Cell. 2021 Jan 21;81(2):255-267.e6
pubmed: 33290745
Nat Commun. 2018 Apr 6;9(1):1337
pubmed: 29626214
Nucleic Acids Res. 2017 Feb 28;45(4):1805-1819
pubmed: 27903902
Cell Rep. 2020 Feb 4;30(5):1319-1328.e6
pubmed: 32023452
Genome Biol. 2017 Aug 7;18(1):151
pubmed: 28784146
Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12305-E12312
pubmed: 30530698
Mol Cell. 2016 Apr 7;62(1):79-91
pubmed: 27058788
F1000Res. 2016 Jun 20;5:1438
pubmed: 27508061
Science. 2004 Feb 27;303(5662):1378-81
pubmed: 14988562
FASEB J. 2019 Jan;33(1):126-139
pubmed: 29965797
J Cell Sci. 2020 Jun 11;133(11):
pubmed: 32381682
Nat Metab. 2021 Jan;3(1):59-74
pubmed: 33462514
Bioinformatics. 2010 Jan 1;26(1):139-40
pubmed: 19910308
Epigenetics Chromatin. 2020 Apr 22;13(1):22
pubmed: 32321567
Cell. 2015 Jul 2;162(1):33-44
pubmed: 26140591
Genome Biol. 2008;9(9):R137
pubmed: 18798982
Genome Biol. 2014 Feb 03;15(2):R29
pubmed: 24485249
Genome Res. 2015 Jun;25(6):836-44
pubmed: 25957148
Nat Methods. 2012 Mar 04;9(4):357-9
pubmed: 22388286
Mol Cell Endocrinol. 2012 Jan 30;348(2):383-93
pubmed: 21872640
Mol Cell. 2013 Jan 10;49(1):158-71
pubmed: 23159735
Nature. 2012 Aug 2;488(7409):116-20
pubmed: 22763441
Nucleic Acids Res. 2018 Jan 9;46(1):203-214
pubmed: 29126175
Mol Cell. 2010 May 28;38(4):576-89
pubmed: 20513432
Bioinformatics. 2013 Jan 1;29(1):15-21
pubmed: 23104886
Immunity. 2017 Aug 15;47(2):298-309.e5
pubmed: 28801231
NAR Genom Bioinform. 2021 Nov 23;3(4):lqab101
pubmed: 34859208
Nat Commun. 2018 Oct 19;9(1):4349
pubmed: 30341289
Nat Biotechnol. 2011 Jan;29(1):24-6
pubmed: 21221095
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W187-91
pubmed: 24799436
F1000Res. 2018 Aug 24;7:1338
pubmed: 30254741
Curr Protoc Bioinformatics. 2014 Sep 08;47:11.12.1-34
pubmed: 25199790
Mol Cell Biol. 2001 Feb;21(4):1393-403
pubmed: 11158324
Nat Commun. 2019 Jan 18;10(1):306
pubmed: 30659202
Cancer Res. 2013 Aug 15;73(16):5130-9
pubmed: 23803465
J Immunol. 2016 Jan 15;196(2):813-822
pubmed: 26663721
Nat Methods. 2017 Oct;14(10):959-962
pubmed: 28846090
Front Endocrinol (Lausanne). 2020 Oct 08;11:572981
pubmed: 33133019
Bioinformatics. 2009 Aug 15;25(16):2078-9
pubmed: 19505943
Nat Methods. 2018 Feb;15(2):123-126
pubmed: 29309061
PLoS One. 2016 Nov 22;11(11):e0166438
pubmed: 27875550
Genome Biol. 2013 Jan 24;14(1):R6
pubmed: 23347430
Nat Commun. 2017 Jun 21;8:15896
pubmed: 28635963
Mol Aspects Med. 2021 Apr;78:100939
pubmed: 33358533

Auteurs

A Louise Hunter (AL)

Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK.

Toryn M Poolman (TM)

Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford OX3 7LE, UK.

Donghwan Kim (D)

Laboratory of Metabolism, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

Frank J Gonzalez (FJ)

Laboratory of Metabolism, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

David A Bechtold (DA)

Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK.

Andrew S I Loudon (ASI)

Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK.

Mudassar Iqbal (M)

Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK.

David W Ray (DW)

Oxford Centre for Diabetes, Endocrinology and Metabolism, University of Oxford, Oxford OX3 7LE, UK; NIHR Oxford Biomedical Research Centre, John Radcliffe Hospital, Oxford OX3 9DU, UK. Electronic address: david.ray@ocdem.ox.ac.uk.

Articles similaires

Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH