Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates.

Scyliorhinus canicula fam20°C scpp sparc-L ameloblasts enamel enameloid gene conversion genomic convergence jawed vertebrate evolution

Journal

Molecular biology and evolution
ISSN: 1537-1719
Titre abrégé: Mol Biol Evol
Pays: United States
ID NLM: 8501455

Informations de publication

Date de publication:
03 05 2022
Historique:
pubmed: 11 5 2022
medline: 25 5 2022
entrez: 10 5 2022
Statut: ppublish

Résumé

In bony vertebrates, skeletal mineralization relies on the secretory calcium-binding phosphoproteins (Scpp) family whose members are acidic extracellular proteins posttranslationally regulated by the Fam20°C kinase. As scpp genes are absent from the elephant shark genome, they are currently thought to be specific to bony fishes (osteichthyans). Here, we report a scpp gene present in elasmobranchs (sharks and rays) that evolved from local tandem duplication of sparc-L 5' exons and show that both genes experienced recent gene conversion in sharks. The elasmobranch scpp is remarkably similar to the osteichthyan scpp members as they share syntenic and gene structure features, code for a conserved signal peptide, tyrosine-rich and aspartate/glutamate-rich regions, and harbor putative Fam20°C phosphorylation sites. In addition, the catshark scpp is coexpressed with sparc-L and fam20°C in tooth and scale ameloblasts, similarly to some osteichthyan scpp genes. Despite these strong similarities, molecular clock and phylogenetic data demonstrate that the elasmobranch scpp gene originated independently from the osteichthyan scpp gene family. Our study reveals convergent events at the sparc-L locus in the two sister clades of jawed vertebrates, leading to parallel diversification of the skeletal biomineralization toolkit. The molecular evolution of sparc-L and its coexpression with fam20°C in catshark ameloblasts provides a unifying genetic basis that suggests that all convergent scpp duplicates inherited similar features from their sparc-L precursor. This conclusion supports a single origin for the hypermineralized outer odontode layer as produced by an ancestral developmental process performed by Sparc-L, implying the homology of the enamel and enameloid tissues in all vertebrates.

Identifiants

pubmed: 35535508
pii: 6582990
doi: 10.1093/molbev/msac099
pmc: PMC9122587
pii:
doi:

Substances chimiques

Calcium-Binding Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.

Références

Cells Tissues Organs. 2011;194(2-4):108-12
pubmed: 21576905
Connect Tissue Res. 1998;39(1-3):25-37; discussion 63-7
pubmed: 11062986
Mol Biol Evol. 2021 Sep 27;38(10):4435-4448
pubmed: 34146103
Nat Ecol Evol. 2018 Sep;2(9):1501-1506
pubmed: 30065354
BMC Evol Biol. 2018 Aug 30;18(1):127
pubmed: 30165817
J Exp Zool B Mol Dev Evol. 2012 Jan 15;318(1):50-8
pubmed: 21954147
J Exp Zool B Mol Dev Evol. 2017 Nov;328(7):645-665
pubmed: 28643450
BMC Evol Biol. 2019 Jan 11;19(1):21
pubmed: 30634908
Nucleic Acids Res. 1997 Sep 1;25(17):3389-402
pubmed: 9254694
BMC Evol Biol. 2015 Mar 14;15:47
pubmed: 25884299
Dev Genes Evol. 2009 Mar;219(3):147-57
pubmed: 19255778
Nat Genet. 2016 Apr;48(4):427-37
pubmed: 26950095
Nat Ecol Evol. 2020 Nov;4(11):1477-1484
pubmed: 32895518
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66
pubmed: 12136088
Evodevo. 2015 Sep 29;6:29
pubmed: 26421144
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Int J Mol Sci. 2021 Jun 21;22(12):
pubmed: 34205668
J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):390-402
pubmed: 25243252
Nature. 2014 Jan 9;505(7482):174-9
pubmed: 24402279
Genome Biol Evol. 2017 Jul 1;9(7):1886-1900
pubmed: 28854603
Bioinformatics. 2017 Nov 15;33(22):3645-3647
pubmed: 29036507
Nature. 2016 Dec 14;540(7633):395-399
pubmed: 27974754
BMC Bioinformatics. 2007 Oct 11;8:382
pubmed: 17931424
Evol Dev. 2014 Nov-Dec;16(6):339-53
pubmed: 25378057
Sci Rep. 2017 Jun 15;7(1):3590
pubmed: 28620244
BMC Biol. 2021 Dec 23;19(1):268
pubmed: 34949191
BMC Evol Biol. 2018 Feb 2;18(1):11
pubmed: 29390973
Bioinformatics. 2000 Oct;16(10):915-22
pubmed: 11120681
iScience. 2021 Jan 01;24(1):102023
pubmed: 33506188
J Cell Biochem. 2020 Mar 1;:
pubmed: 32115754
Nat Commun. 2018 Mar 23;9(1):1218
pubmed: 29572475
Mol Biol Evol. 2007 Aug;24(8):1586-91
pubmed: 17483113
Microsc Res Tech. 2002 Dec 1;59(5):352-72
pubmed: 12430166
Proc Biol Sci. 2013 Feb 27;280(1757):20122963
pubmed: 23446527
Int J Mol Sci. 2017 Nov 16;18(11):
pubmed: 29144443
Nucleic Acids Res. 2003 Jul 1;31(13):3784-8
pubmed: 12824418
Mol Biol Evol. 2021 Apr 13;38(4):1595-1607
pubmed: 33331879
Bone Rep. 2021 Feb 10;14:100754
pubmed: 33665237
J Bone Miner Res. 2013 Dec;28(12):2508-11
pubmed: 23703840
Nat Ecol Evol. 2018 Nov;2(11):1761-1771
pubmed: 30297745
Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):18063-8
pubmed: 16332957
Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4060-5
pubmed: 12646701
Mol Biol Evol. 2018 Oct 1;35(10):2582-2584
pubmed: 30165589
J Anat. 2019 Dec;235(6):1105-1113
pubmed: 31355451
Mol Biol Evol. 2015 Jan;32(1):268-74
pubmed: 25371430
J Histochem Cytochem. 1997 Jun;45(6):823-35
pubmed: 9199668
Mol Phylogenet Evol. 2019 Apr;133:352-361
pubmed: 30599197
Science. 2012 Jun 1;336(6085):1150-3
pubmed: 22582013
Curr Biol. 2007 Jul 17;17(14):1241-7
pubmed: 17614282
Proc Natl Acad Sci U S A. 2004 Aug 3;101(31):11356-61
pubmed: 15272073
Mol Biol Evol. 2011 Jul;28(7):2053-61
pubmed: 21245413
J Morphol. 2007 Jan;268(1):33-49
pubmed: 17146771
Bone. 2014 Sep;66:90-5
pubmed: 24928493
Nature. 2015 Oct 1;526(7571):108-11
pubmed: 26416752
Nat Methods. 2017 Jun;14(6):587-589
pubmed: 28481363
Sci Rep. 2016 Aug 25;6:31791
pubmed: 27558399
J Exp Zool B Mol Dev Evol. 2013 Dec;320(8):525-37
pubmed: 24106181
Genome Res. 2004 Dec;14(12):2397-405
pubmed: 15545497
Immunogenetics. 2000 Mar;51(3):169-78
pubmed: 10752625
Genome Biol Evol. 2018 Jan 1;10(1):344-358
pubmed: 29340581
J Exp Zool B Mol Dev Evol. 2006 May 15;306(3):278-94
pubmed: 16555304
Evol Dev. 2014 May;16(3):125-6
pubmed: 24798313
Sci Rep. 2020 May 26;10(1):8684
pubmed: 32457384
Cells Tissues Organs. 2007;186(1):7-24
pubmed: 17627116
Syst Biol. 2010 May;59(3):307-21
pubmed: 20525638
J Biol Chem. 2020 Feb 14;295(7):1943-1959
pubmed: 31919099
Nature. 2015 Apr 23;520(7548):490-7
pubmed: 25903631
J Exp Zool B Mol Dev Evol. 2006 May 15;306(3):295-316
pubmed: 16358265

Auteurs

Nicolas Leurs (N)

Institut des Sciences de l'Evolution de Montpellier, ISEM, Univ Montpellier, CNRS, IRD, Montpellier, France.

Camille Martinand-Mari (C)

Institut des Sciences de l'Evolution de Montpellier, ISEM, Univ Montpellier, CNRS, IRD, Montpellier, France.

Sylvain Marcellini (S)

Departamento de Biología Celular, Facultad de Ciencias Biológicas, Universidad de Concepción, Concepción, Chile.

Mélanie Debiais-Thibaud (M)

Institut des Sciences de l'Evolution de Montpellier, ISEM, Univ Montpellier, CNRS, IRD, Montpellier, France.

Articles similaires

Genome, Chloroplast Phylogeny Genetic Markers Base Composition High-Throughput Nucleotide Sequencing
Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice

Classifications MeSH