Predicting hospitalization of COVID-19 positive patients using clinician-guided machine learning methods.

COVID-19 electronic health record hospitalization machine learning temporal patterns

Journal

Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800

Informations de publication

Date de publication:
12 09 2022
Historique:
received: 24 12 2021
revised: 11 04 2022
accepted: 13 05 2022
pubmed: 21 5 2022
medline: 16 9 2022
entrez: 20 5 2022
Statut: ppublish

Résumé

The coronavirus disease 2019 (COVID-19) is a resource-intensive global pandemic. It is important for healthcare systems to identify high-risk COVID-19-positive patients who need timely health care. This study was conducted to predict the hospitalization of older adults who have tested positive for COVID-19. We screened all patients with COVID test records from 11 Mass General Brigham hospitals to identify the study population. A total of 1495 patients with age 65 and above from the outpatient setting were included in the final cohort, among which 459 patients were hospitalized. We conducted a clinician-guided, 3-stage feature selection, and phenotyping process using iterative combinations of literature review, clinician expert opinion, and electronic healthcare record data exploration. A list of 44 features, including temporal features, was generated from this process and used for model training. Four machine learning prediction models were developed, including regularized logistic regression, support vector machine, random forest, and neural network. All 4 models achieved area under the receiver operating characteristic curve (AUC) greater than 0.80. Random forest achieved the best predictive performance (AUC = 0.83). Albumin, an index for nutritional status, was found to have the strongest association with hospitalization among COVID positive older adults. In this study, we developed 4 machine learning models for predicting general hospitalization among COVID positive older adults. We identified important clinical factors associated with hospitalization and observed temporal patterns in our study cohort. Our modeling pipeline and algorithm could potentially be used to facilitate more accurate and efficient decision support for triaging COVID positive patients.

Identifiants

pubmed: 35595237
pii: 6589895
doi: 10.1093/jamia/ocac083
pmc: PMC9129151
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural

Langues

eng

Sous-ensembles de citation

IM

Pagination

1661-1667

Subventions

Organisme : NIA NIH HHS
ID : P30 AG031679
Pays : United States
Organisme : Assisted Living Communities: Transforming Predictive Data into Proactive Care for COVID-19

Informations de copyright

© The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Références

Diabetes Metab Syndr. 2021 May-Jun;15(3):869-875
pubmed: 33892403
Int J Med Inform. 2020 Oct;142:104258
pubmed: 32927229
J Med Internet Res. 2021 Apr 28;23(4):e26075
pubmed: 33835931
PLoS One. 2021 Jan 28;16(1):e0246170
pubmed: 33507954
JMIR Med Inform. 2021 Jan 11;9(1):e23811
pubmed: 33326405
Sci Rep. 2021 Aug 9;11(1):16144
pubmed: 34373540
J Gen Intern Med. 2021 Mar;36(3):730-737
pubmed: 33274414
J Infect Public Health. 2021 May;14(5):638-646
pubmed: 33848893
J Healthc Inform Res. 2021;5(2):181-200
pubmed: 33681695
JMIR Med Inform. 2021 Jan 27;9(1):e24207
pubmed: 33400679
N Engl J Med. 2016 Sep 29;375(13):1216-9
pubmed: 27682033
J Am Med Inform Assoc. 2021 Mar 1;28(3):427-443
pubmed: 32805036
J Med Internet Res. 2021 Jul 9;23(7):e29514
pubmed: 34081611
Proc Natl Acad Sci U S A. 2020 Apr 21;117(16):9122-9126
pubmed: 32245814
Sci Rep. 2021 Feb 18;11(1):4200
pubmed: 33603086
PLoS One. 2020 Aug 11;15(8):e0237419
pubmed: 32780765
Sci Rep. 2021 Mar 5;11(1):5322
pubmed: 33674708
Antioxid Redox Signal. 2021 Jul 10;35(2):139-142
pubmed: 32524832
JMIR Public Health Surveill. 2021 Nov 15;7(11):e29504
pubmed: 34543227
Elife. 2020 Oct 12;9:
pubmed: 33044170
Crit Care Res Pract. 2021 Jun 9;2021:9963274
pubmed: 34367693
Aging Clin Exp Res. 2020 Aug;32(8):1599-1608
pubmed: 32557332
J Am Coll Emerg Physicians Open. 2021 Mar 31;2(2):e12406
pubmed: 33817689

Auteurs

Wenyu Song (W)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.
Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.

Linying Zhang (L)

Department of Biomedical Informatics, Columbia University, New York, New York, USA.

Luwei Liu (L)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.

Michael Sainlaire (M)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.

Mehran Karvar (M)

Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.
Department of Surgery, Brigham & Women's Hospital, Boston, Massachusetts, USA.

Min-Jeoung Kang (MJ)

Department of Nursing, College of Nursing, The Catholic University of Korea, Seoul, South Korea.

Avery Pullman (A)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.

Stuart Lipsitz (S)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.
Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.

Anthony Massaro (A)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.
Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.

Namrata Patil (N)

Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.
Department of Surgery, Brigham & Women's Hospital, Boston, Massachusetts, USA.

Ravi Jasuja (R)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.
Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.

Patricia C Dykes (PC)

Department of Medicine, Brigham & Women's Hospital, Boston, Massachusetts, USA.
Department of Medicine, Harvard Medical School, Boston, Massachusetts, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH