A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN).
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
23 05 2022
23 05 2022
Historique:
received:
13
08
2021
accepted:
05
04
2022
entrez:
23
5
2022
pubmed:
24
5
2022
medline:
26
5
2022
Statut:
epublish
Résumé
Accurate characterization of in utero human brain maturation is critical as it involves complex and interconnected structural and functional processes that may influence health later in life. Magnetic resonance imaging is a powerful tool to investigate equivocal neurological patterns during fetal development. However, the number of acquisitions of satisfactory quality available in this cohort of sensitive subjects remains scarce, thus hindering the validation of advanced image processing techniques. Numerical phantoms can mitigate these limitations by providing a controlled environment with a known ground truth. In this work, we present FaBiAN, an open-source Fetal Brain magnetic resonance Acquisition Numerical phantom that simulates clinical T2-weighted fast spin echo sequences of the fetal brain. This unique tool is based on a general, flexible and realistic setup that includes stochastic fetal movements, thus providing images of the fetal brain throughout maturation comparable to clinical acquisitions. We demonstrate its value to evaluate the robustness and optimize the accuracy of an algorithm for super-resolution fetal brain magnetic resonance imaging from simulated motion-corrupted 2D low-resolution series compared to a synthetic high-resolution reference volume. We also show that the images generated can complement clinical datasets to support data-intensive deep learning methods for fetal brain tissue segmentation.
Identifiants
pubmed: 35606398
doi: 10.1038/s41598-022-10335-4
pii: 10.1038/s41598-022-10335-4
pmc: PMC9127105
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
8682Subventions
Organisme : Swiss National Science Foundation
ID : 182602
Pays : Switzerland
Organisme : Swiss National Science Foundation
ID : 173129
Pays : Switzerland
Organisme : Marie Curie
ID : Marie Sklodowska-Curie project TRABIT, agreement No 765148
Pays : United Kingdom
Informations de copyright
© 2022. The Author(s).
Références
Concepts Magn Reson Part A Bridg Educ Res. 2014 Nov;43(6):237-266
pubmed: 26225129
Med Phys. 2014 Mar;41(3):033701
pubmed: 24593745
Magn Reson Med. 2007 Feb;57(2):308-18
pubmed: 17260370
Magn Reson Med. 2019 Jul;82(1):326-341
pubmed: 30883879
Sci Rep. 2022 May 23;12(1):8682
pubmed: 35606398
J Neuroimaging. 2016 Sep;26(5):539-44
pubmed: 26990618
IEEE Trans Image Process. 2004 Apr;13(4):600-12
pubmed: 15376593
Neuroimage. 2006 Jul 1;31(3):1116-28
pubmed: 16545965
Sci Rep. 2017 Mar 28;7(1):476
pubmed: 28352082
Lancet Neurol. 2009 Jan;8(1):110-24
pubmed: 19081519
J Pineal Res. 2014 Apr;56(3):283-94
pubmed: 24456220
Magn Reson Imaging. 1993;11(4):557-68
pubmed: 8316069
Magn Reson Med. 2018 Aug;80(2):767-779
pubmed: 29243295
Endocrinol Nutr. 2012 Jun-Jul;59(6):383-93
pubmed: 22483564
Magn Reson Med. 2003 Mar;49(3):527-35
pubmed: 12594756
Sci Data. 2021 Jul 6;8(1):167
pubmed: 34230489
Neuroimage. 2020 Feb 1;206:116324
pubmed: 31704293
Med Image Anal. 2012 Dec;16(8):1550-64
pubmed: 22939612
Proc IEEE Inst Electr Electron Eng. 2009 Dec;97(12):1954-1968
pubmed: 26472880
J Magn Reson. 2010 Aug;205(2):276-85
pubmed: 20542458
Front Neurosci. 2020 Dec 02;14:591683
pubmed: 33343286
Rev Neurosci. 2014;25(6):841-50
pubmed: 25222596
Magn Reson Med. 2012 Jun;67(6):1803-14
pubmed: 22012743
J Cardiovasc Magn Reson. 2014 Jul 04;16:48
pubmed: 24996972
Magn Reson Med. 2006 Apr;55(4):826-35
pubmed: 16463351
Nat Commun. 2016 Aug 16;7:12445
pubmed: 27526996
Magn Reson Imaging. 2017 Jan;35:69-80
pubmed: 27594531
Med Image Comput Comput Assist Interv. 2010;13(Pt 2):355-62
pubmed: 20879335
J Pediatr (Rio J). 2017 Sep - Oct;93(5):437-438
pubmed: 28432862
AJNR Am J Neuroradiol. 2018 Jul;39(7):1341-1348
pubmed: 29748201
Neuroimage. 2013 Jan 1;64:505-16
pubmed: 22982360
Med Image Anal. 2012 Jan;16(1):28-37
pubmed: 21636311
Phys Med Biol. 2010 Jan 21;55(2):N23-38
pubmed: 20019402
IEEE Trans Med Imaging. 1999 Nov;18(11):1085-97
pubmed: 10661326
Magn Reson Med. 1997 May;37(5):723-9
pubmed: 9126946
Am J Psychiatry. 2017 Apr 1;174(4):319-328
pubmed: 27838934
Radiology. 2009 Jul;252(1):209-17
pubmed: 19561257
Magn Reson Imaging. 2019 Dec;64:77-89
pubmed: 31181246
IEEE Trans Med Imaging. 2021 Apr;40(4):1123-1133
pubmed: 33351755
Front Pediatr. 2021 Aug 10;9:639746
pubmed: 34447726
Magn Reson Med. 2017 Jan;77(1):361-373
pubmed: 26800383
J Autism Dev Disord. 2019 Nov;49(11):4572-4583
pubmed: 31410696
Magn Reson Med. 2006 May;55(5):1030-7
pubmed: 16598719
Neuroimage. 2015 Sep;118:584-97
pubmed: 26072252
Magn Reson Med. 2001 Jul;46(1):6-12
pubmed: 11443704
Obstet Gynecol Sci. 2017 Nov;60(6):506-519
pubmed: 29184858
Magn Reson Med. 2010 Jul;64(1):186-93
pubmed: 20577987
Magn Reson Med. 2004 Jan;51(1):68-80
pubmed: 14705047
J Cardiovasc Magn Reson. 2014 Aug 20;16:63
pubmed: 25204441
Neuroimage. 2006 Oct 1;32(4):1656-68
pubmed: 16875843
IEEE Trans Med Imaging. 2010 Oct;29(10):1739-58
pubmed: 20529730
Magn Reson Imaging. 2017 Dec;44:72-81
pubmed: 28782676
Comput Methods Programs Biomed. 2021 Sep;208:106236
pubmed: 34311413
J Magn Reson Imaging. 2015 Feb;41(2):266-95
pubmed: 24737382
IEEE Signal Process Mag. 2020 Jan;37(1):94-104
pubmed: 33746469
J Cardiovasc Magn Reson. 2019 May 23;21(1):29
pubmed: 31118056
Comput Biol Med. 2020 May;120:103755
pubmed: 32421654
IEEE Trans Med Imaging. 2017 Feb;36(2):527-537
pubmed: 28113746
Magn Reson Med. 2006 Aug;56(2):364-80
pubmed: 16841304
Magn Reson Med. 2009 Apr;61(4):899-906
pubmed: 19195021
Magn Reson Med. 2015 May;73(5):1795-802
pubmed: 25046845
Magn Reson Med. 2005 Sep;54(3):507-12
pubmed: 16086319
Dev Psychopathol. 2021 Aug;33(3):899-913
pubmed: 32489161
IEEE Trans Med Imaging. 2015 Sep;34(9):1901-13
pubmed: 25807565
IEEE Trans Med Imaging. 2014 Mar;33(3):607-17
pubmed: 24595337
Neuroimage. 2018 Apr 15;170:231-248
pubmed: 28666878
Acad Radiol. 2006 Sep;13(9):1072-81
pubmed: 16935719
Magn Reson Med. 2015 Mar;73(3):1065-74
pubmed: 24753216
Med Phys. 2010 Sep;37(9):4902-15
pubmed: 20964209
Magn Reson Med. 2017 Sep;78(3):909-916
pubmed: 27699879
Prenat Diagn. 2015 Apr;35(4):400-8
pubmed: 25601041
Phys Med Biol. 2014 Sep 21;59(18):5287-303
pubmed: 25144615
IEEE Trans Med Imaging. 1998 Jun;17(3):463-8
pubmed: 9735909