Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning.

RECIST automatic classification natural language processing oncology supervised machine learning treatment response

Journal

Studies in health technology and informatics
ISSN: 1879-8365
Titre abrégé: Stud Health Technol Inform
Pays: Netherlands
ID NLM: 9214582

Informations de publication

Date de publication:
25 May 2022
Historique:
entrez: 25 5 2022
pubmed: 26 5 2022
medline: 27 5 2022
Statut: ppublish

Résumé

The present study shows first attempts to automatically classify oncology treatment responses on the basis of the textual conclusion sections of radiology reports according to the RECIST classification. After a robust and extended manual annotation of 543 conclusion sections (5-to-50-word long), and after the training of several machine learning techniques (from traditional machine learning to deep learning), the best results show an accuracy score of 0.90 for a two-class classification (non-progressive vs. progressive disease) and of 0.82 for a four-class classification (complete response, partial response, stable disease, progressive disease) both with Logistic Regression approach. Some innovative solutions are further suggested to improve these scores in the future.

Identifiants

pubmed: 35612224
pii: SHTI220605
doi: 10.3233/SHTI220605
doi:

Types de publication

Journal Article

Langues

eng

Pagination

849-853

Auteurs

Jean-Philippe Goldman (JP)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.
Department of Radiology and Medical Informatics, University of Geneva, Switzerland.

Luc Mottin (L)

HES-SO/HEG Genève, Information Sciences, Geneva, Switzerland.
SIB Text Mining, Swiss Institute of Bioinformatics, Switzerland.

Jamil Zaghir (J)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.
Department of Radiology and Medical Informatics, University of Geneva, Switzerland.

Daniel Keszthelyi (D)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.
Department of Radiology and Medical Informatics, University of Geneva, Switzerland.

Belinda Lokaj (B)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.

Hugues Turbé (H)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.
Department of Radiology and Medical Informatics, University of Geneva, Switzerland.

Julien Gobeil (J)

HES-SO/HEG Genève, Information Sciences, Geneva, Switzerland.

Patrick Ruch (P)

HES-SO/HEG Genève, Information Sciences, Geneva, Switzerland.
SIB Text Mining, Swiss Institute of Bioinformatics, Switzerland.

Julien Ehrsam (J)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.

Christian Lovis (C)

Division of Medical Information Sciences, Geneva University Hospital, Switzerland.
Department of Radiology and Medical Informatics, University of Geneva, Switzerland.

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Classifications MeSH