Phylogenetic analysis of lumpy skin disease virus isolates in Russia in 2019-2021.
Journal
Archives of virology
ISSN: 1432-8798
Titre abrégé: Arch Virol
Pays: Austria
ID NLM: 7506870
Informations de publication
Date de publication:
Aug 2022
Aug 2022
Historique:
received:
11
03
2022
accepted:
15
04
2022
pubmed:
7
6
2022
medline:
29
6
2022
entrez:
6
6
2022
Statut:
ppublish
Résumé
Lumpy skin disease continues to pose a threat to countries in the East and Asia-Pacific regions. Although only occasional LSDV outbreaks have been reported recently in Russia, these have been mainly restricted to the Far East region of the country. An increase in the number of outbreaks in South East Asia has been attributed to recombinant vaccine-like LSDV strains. In this scenario, it is epidemiologically important to perform phylogenetic analysis to track the distribution of LSDV worldwide at the genetic level to understand routes of migration and molecular evolution patterns. In this study, we investigated the RPO30 and GPCR gene regions of LSDV isolates associated with outbreaks in 2019-2021 in Siberia and the Far East region of Russia. The inferred phylogeny confirms the recombinant origin of these sequenced isolates. Based on sequences of these selected loci, the isolates from 2019 differed from isolates detected in Russia in the past and from isolates from Asian countries, while the isolates from 2020 and 2021 exhibited a high degree of similarity to the Asian isolates. These findings indicate that recombinant LSDV strains continue to persist and additionally point to the establishment of a specific lineage of recombinant isolates in the region. Full genome sequencing is still needed to gain more information about how the circulating isolates are related to each other.
Identifiants
pubmed: 35666394
doi: 10.1007/s00705-022-05487-7
pii: 10.1007/s00705-022-05487-7
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1693-1699Subventions
Organisme : Ministry of Education and Science of Russia
ID : 075-15-2021-1054
Informations de copyright
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.
Références
Buller RM, Arif BM, Black DN, Dumbell KR, Esposito JJ, Lefkowitz EJ, McFadden G, Moss B, Mercer AA, Moyer RW, Skinner MA, Tripathy DN (2005). Family poxviridae. Virus taxonomy: classification and nomenclature of viruses. Eighth report of the International Committee on Taxonomy of Viruses, pp 117–133
Tulman ER, Afonso CL, Lu Z, Zsak L, Sur JH, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL (2002) The genomes of sheeppox and goatpox viruses. J Virol 76(12):6054–6061. https://doi.org/10.1128/JVI.76.12.6054-6061.2002
doi: 10.1128/JVI.76.12.6054-6061.2002
pubmed: 12021338
pmcid: 136203
Tulman ER, Afonso CL, Lu Z, Zsak L, Kutish GF, Rock DL (2001) Genome of lumpy skin disease virus. J Virol 75(15):7122–7130. https://doi.org/10.1128/JVI.75.15.7122-7130.2001
doi: 10.1128/JVI.75.15.7122-7130.2001
pubmed: 11435593
pmcid: 114441
Prozesky L, Barnard BJ (1982) A study of the pathology of lumpy skin disease in cattle. Onderstepoort J Vet Res 49(3):167–175
pubmed: 7177597
Babiuk S, Bowden TR, Boyle DB, Wallace DB, Kitching RP (2008) Capripoxviruses: an emerging worldwide threat to sheep, goats and cattle. Transbound Emerg Dis 55:263–272. https://doi.org/10.1111/j.1865-1682.2008.01043.x
doi: 10.1111/j.1865-1682.2008.01043.x
pubmed: 18774991
Kononov A, Prutnikov P, Shumilova I, Kononova S, Nesterov A, Byadovskaya O, Pestova Y, Diev V, Sprygin A (2019) Determination of lumpy skin disease virus in bovine meat and offal products following experimental infection. Transbound Emerg Dis 66(3):1332–1340. https://doi.org/10.1111/tbed.13158
doi: 10.1111/tbed.13158
pubmed: 30811855
Hansen S, Pessôa R, Nascimento A, El-Tholoth M, Abd El Wahed A, Sanabani SS (2019) Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing. Data Brief 27:104764. https://doi.org/10.1016/j.dib.2019.104764
doi: 10.1016/j.dib.2019.104764
pubmed: 31763412
pmcid: 6864129
TadesseDegu BM, Fesseha H (2020) Epidemiological status and economic impact of lumpy skin disease-review. Int J Recent Biotechnol 8:1–15. https://doi.org/10.18782/2322-0392.1284
doi: 10.18782/2322-0392.1284
Tuppurainen ESM, Venter EH, Shisler JL, Gari G, Mekonnen GA, Juleff N, Lyons NA, De Clercq K, Upton C, Bowden TR, Babiuk LA (2017) Capripoxvirus diseases: current status and opportunities for control. Transbound Emerg Dis 64(3):729–745. https://doi.org/10.1111/tbed.12444
doi: 10.1111/tbed.12444
pubmed: 26564428
Tasioudi KE, Antoniou SE, Iliadou P, Sachpatzidis A, Plevraki E, Agianniotaki EI, Fouki C, Mangana-Vougiouka O, Chondrokouki E, Dile C (2016) Emergence of lumpy skin disease in Greece, 2015. Transbound Emerg Dis 63(3):260–265. https://doi.org/10.1111/tbed.12497
doi: 10.1111/tbed.12497
pubmed: 26991342
Şevik M, Doğan M (2017) Epidemiological and molecular studies on lumpy skin disease outbreaks in Turkey during 2014–2015. Transbound Emerg Dis 64(4):1268–1279. https://doi.org/10.1111/tbed.12501
doi: 10.1111/tbed.12501
pubmed: 27039847
Lu G, Xie J, Luo J, Shao R, Jia K, Li S (2021) Lumpy skin disease outbreaks in China, since 3 August 2019. Transbound Emerg Dis 68(2):216–219. https://doi.org/10.1111/tbed.13898
doi: 10.1111/tbed.13898
pubmed: 33119963
Sudhakar SB, Mishra N, Kalaiyarasu S, Jhade SK, Hemadri D, Sood R, Bal GC, Nayak MK, Pradhan SK, Singh VP (2020) Lumpy skin disease (LSD) outbreaks in cattle in Odisha state, India in August 2019: Epidemiological features and molecular studies. Transbound Emerg Dis 67(6):2408–2422. https://doi.org/10.1111/tbed.13579
doi: 10.1111/tbed.13579
pubmed: 32304275
Acharya KP, Subedi D (2020) First outbreak of lumpy skin disease in Nepal. Transbound Emerg Dis Prev Vet Med 102(4):274–283. https://doi.org/10.1111/tbed.13815
doi: 10.1111/tbed.13815
Tran HTT, Truong AD, Dang AK, Ly DV, Nguyen CT, Chu NT, Hoang TV, Nguyen HT, Nguyen VT, Dang HV (2021) Lumpy skin disease outbreaks in Vietnam, 2020. Transbound Emerg Dis 68(3):977–980. https://doi.org/10.1111/tbed.14022
doi: 10.1111/tbed.14022
pubmed: 33548101
Sprygin A, Artyuchova E, Babin Y, Prutnikov P, Kostrova E, Byadovskaya O, Kononov A (2018) Epidemiological characterization of lumpy skin disease outbreaks in Russia in 2016. Transbound Emerg Dis 65(6):1514–1521. https://doi.org/10.1111/tbed.12889
doi: 10.1111/tbed.12889
pubmed: 29749049
WAHIS. https://wahis.oie.int/#/events?viewAll=true
Sprygin A, Van Schalkwyk A, Shumilova I, Nesterov A, Kononova S, Prutnikov P, Byadovskaya O, Kononov A (2020) Full-length genome characterization of a novel recombinant vaccine-like lumpy skin disease virus strain detected during the climatic winter in Russia, 2019. Adv Virol 165(11):2675–2677. https://doi.org/10.1007/s00705-020-04756-7
doi: 10.1007/s00705-020-04756-7
Sprygin A, Pestova Y, Bjadovskaya O, Prutnikov P, Zinyakov N, Kononova S, Ruchnova O, Lozovoy D, Chvala I, Kononov A (2020) Evidence of recombination of vaccine strains of lumpy skin disease virus with field strains, causing disease. PLoS One 15(5):e0232584. https://doi.org/10.1371/journal.pone.0232584
doi: 10.1371/journal.pone.0232584
pubmed: 32401805
pmcid: 7219772
Badhy SC, Chowdhury MGA, Settypalli TBK, Cattoli G, Lamien CE, Fakir MAU, Akter S, Osmani MG, Talukdar F, Begum N, Khan IA, Sadekuzzaman M (2021) Molecular characterization of lumpy skin disease virus (LSDV) emerged in Bangladesh reveals unique genetic features compared to contemporary field strains. BMC Vet Res 17(1):1–11. https://doi.org/10.1186/s12917-021-02751-x
doi: 10.1186/s12917-021-02751-x
Roy P, Jaisree S, Balakrishnan S, Senthilkumar K, Mahaprabhu R, Mishra A, Maity B, Ghosh TK, Karmakar AP (2018) Molecular epidemiology of goat pox viruses. Transbound Emerg Dis 65(1):32–36. https://doi.org/10.1111/tbed.12763
doi: 10.1111/tbed.12763
pubmed: 29150913
Van Schalkwyk A, Byadovskaya O, Shumilova I, Wallace DB, Sprygin A (2021) Estimating evolutionary changes between highly passaged and original parental lumpy skin disease virus strains. Transbound Emerg Dis. https://doi.org/10.1111/tbed.14326
doi: 10.1111/tbed.14326
pubmed: 34555250
Ma J, Yuan Y, Shao J, Sun M, He W, Chen J, Liu Q (2021) Genomic characterization of lumpy skin disease virus in southern China. Transbound Emerg Dis. https://doi.org/10.1111/tbed.14432
doi: 10.1111/tbed.14432
pubmed: 34927369
Mathijs E, Vandenbussche F, Nguyen L, Aerts L, Nguyen T, De Leeuw I, Quang M, Nguyen HD, Philips W, Dam TV, Haegeman A, De Clercq K (2021) Coding-complete sequences of recombinant lumpy skin disease viruses collected in 2020 from four outbreaks in northern Vietnam. Microbiol Resour Announc 10(48):e00897-21. https://doi.org/10.1128/MRA.00897-21
doi: 10.1128/MRA.00897-21
pmcid: 8638603
Haegeman A, De Leeuw I, Saduakassova M, Van Campe W, Aerts L, Philips W, Sultanov A, Mostin L, De Clercq K (2021) The importance of quality control of LSDV live attenuated vaccines for its safe application in the field. Vaccines 9(9):1019. https://doi.org/10.3390/vaccines9091019
doi: 10.3390/vaccines9091019
pubmed: 34579256
pmcid: 8472990
Byadovskaya O, Pestova Y, Kononov A, Shumilova I, Kononova S, Nesterov A, Babiuk S, Sprygin A (2021) Performance of the currently available DIVA real-time PCR assays in classical and recombinant lumpy skin disease viruses. Transbound Emerg Dis 68(6):3020–3024. https://doi.org/10.1111/tbed.13942
doi: 10.1111/tbed.13942
pubmed: 33253485