Exome sequencing analysis of Japanese autism spectrum disorder case-control sample supports an increased burden of synaptic function-related genes.


Journal

Translational psychiatry
ISSN: 2158-3188
Titre abrégé: Transl Psychiatry
Pays: United States
ID NLM: 101562664

Informations de publication

Date de publication:
11 07 2022
Historique:
received: 01 02 2022
accepted: 17 06 2022
revised: 15 06 2022
entrez: 10 7 2022
pubmed: 11 7 2022
medline: 14 7 2022
Statut: epublish

Résumé

Autism spectrum disorder (ASD) is a highly heritable, complex disorder in which rare variants contribute significantly to disease risk. Although many genes have been associated with ASD, there have been few genetic studies of ASD in the Japanese population. In whole exomes from a Japanese ASD sample of 309 cases and 299 controls, rare variants were associated with ASD within specific neurodevelopmental gene sets, including highly constrained genes, fragile X mental retardation protein target genes, and genes involved in synaptic function, with the strongest enrichment in trans-synaptic signaling (p = 4.4 × 10

Identifiants

pubmed: 35811316
doi: 10.1038/s41398-022-02033-6
pii: 10.1038/s41398-022-02033-6
pmc: PMC9271461
doi:

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

265

Informations de copyright

© 2022. The Author(s).

Références

Dis Model Mech. 2010 Mar-Apr;3(3-4):133-5
pubmed: 20212079
Mol Psychiatry. 2010 Jun;15(6):637-46
pubmed: 19546859
Cell. 2013 Nov 21;155(5):997-1007
pubmed: 24267886
J Biol Chem. 2021 Jan-Jun;296:100166
pubmed: 33478937
Transl Psychiatry. 2013 Jun 11;3:e270
pubmed: 23756379
Nat Commun. 2019 Jun 7;10(1):2506
pubmed: 31175295
Cell. 2017 Nov 2;171(4):745-769
pubmed: 29100073
Bioinformatics. 2014 Oct 15;30(20):2843-51
pubmed: 24974202
Nucleic Acids Res. 2010 Jul;38(13):4218-30
pubmed: 20308160
Cell Rep. 2018 Jan 16;22(3):734-747
pubmed: 29346770
Nat Genet. 2019 Mar;51(3):431-444
pubmed: 30804558
Biostatistics. 2016 Jan;17(1):1-15
pubmed: 26363037
Neuron. 2019 Jul 17;103(2):217-234.e4
pubmed: 31171447
Cell. 2019 Sep 5;178(6):1287-1298
pubmed: 31491383
Sci Adv. 2016 Sep 21;2(9):e1600558
pubmed: 27679817
Nature. 2016 Aug 17;536(7616):285-91
pubmed: 27535533
Front Mol Neurosci. 2018 Jan 12;10:440
pubmed: 29375303
Nucleic Acids Res. 2010 Sep;38(16):e164
pubmed: 20601685
Nature. 2012 Sep 20;489(7416):391-399
pubmed: 22996553
Nat Genet. 2016 May;48(5):552-5
pubmed: 26998691
Lancet. 2018 Aug 11;392(10146):508-520
pubmed: 30078460
Neurosci Res. 2021 Sep;170:24-31
pubmed: 33316300
Cell Rep. 2020 Jan 7;30(1):215-228.e5
pubmed: 31914388
J Autism Dev Disord. 1989 Jun;19(2):185-212
pubmed: 2745388
J Neurochem. 2021 Apr;157(2):208-228
pubmed: 32738165
Genes (Basel). 2021 Feb 22;12(2):
pubmed: 33671795
Nature. 2014 Nov 13;515(7526):209-15
pubmed: 25363760
JAMA. 2017 Sep 26;318(12):1182-1184
pubmed: 28973605
Trends Neurosci. 2020 Apr;43(4):227-241
pubmed: 32209454
Nat Genet. 2006 Feb;38(2):214-7
pubmed: 16429162
Nat Methods. 2010 Apr;7(4):248-9
pubmed: 20354512
Nat Genet. 2006 May;38(5):556-60
pubmed: 16582909
Nat Neurosci. 2016 Nov;19(11):1433-1441
pubmed: 27694994
J Autism Dev Disord. 1994 Oct;24(5):659-85
pubmed: 7814313
Cell. 2011 Jul 22;146(2):247-61
pubmed: 21784246
Nature. 2014 Nov 13;515(7526):216-21
pubmed: 25363768
Nat Rev Neurosci. 2015 Sep;16(9):551-63
pubmed: 26289574
Nat Genet. 2015 Jun;47(6):582-8
pubmed: 25961944
Neurosci Biobehav Rev. 2021 Sep;128:244-257
pubmed: 34166716
J Hum Genet. 2021 Jan;66(1):25-37
pubmed: 32958875
Sci Adv. 2020 Dec 18;6(51):
pubmed: 33355142
Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33
pubmed: 25431634
Nature. 2013 Jan 17;493(7432):327-37
pubmed: 23325215
Cell. 2021 Sep 16;184(19):5053-5069.e23
pubmed: 34390642
Exp Neurol. 2018 Feb;300:51-59
pubmed: 29092799
Am J Hum Genet. 2008 Oct;83(4):445-56
pubmed: 18817904
J Autism Dev Disord. 2001 Feb;31(1):5-17
pubmed: 11439754
Nat Genet. 2019 Dec;51(12):1670-1678
pubmed: 31740837
Neuron. 2019 Mar 20;101(6):1070-1088
pubmed: 30897358
Bioinformatics. 2010 Nov 15;26(22):2867-73
pubmed: 20926424
J Am Acad Child Adolesc Psychiatry. 2007 Dec;46(12):1668-76
pubmed: 18030089
Cell. 2020 Feb 6;180(3):568-584.e23
pubmed: 31981491
J Neurosci. 2011 Sep 21;31(38):13485-99
pubmed: 21940441
Am J Hum Genet. 2009 Dec;85(6):833-46
pubmed: 19944402
Hum Mol Genet. 2002 Oct 1;11(20):2507-15
pubmed: 12351587
Nat Protoc. 2009;4(7):1073-81
pubmed: 19561590

Auteurs

Hiroki Kimura (H)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Masahiro Nakatochi (M)

Public Health Informatics Unit, Department of Integrated Health Sciences, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Branko Aleksic (B)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan. branko@med.nagoya-u.ac.jp.

James Guevara (J)

Department of Psychiatry, University of California San Diego, San Diego, CA, USA.

Miho Toyama (M)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Yu Hayashi (Y)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Hidekazu Kato (H)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Itaru Kushima (I)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.
Medical Genomics Center, Nagoya University Hospital, Nagoya, Aichi, Japan.

Mako Morikawa (M)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Kanako Ishizuka (K)

Health Support Center, Nagoya Institute of Technology, Nagoya, Aichi, Japan.

Takashi Okada (T)

Department of Developmental Disorders, National Institute of Mental Health, National Center of Neurology and Psychiatry, Tokyo, Japan.

Yoshinori Tsurusaki (Y)

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.
Faculty of Nutritional Science, Sagami Women's University, Sagamihara, Japan.

Atsushi Fujita (A)

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.

Noriko Miyake (N)

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.
Department of Human Genetics, National Center for Global Health and Medicine, Tokyo, Japan.

Tomoo Ogi (T)

Department of Genetics, Research Institute of Environmental Medicine, Nagoya University, Nagoya, Aichi, Japan.
Department of Human Genetics and Molecular Biology, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.

Atsushi Takata (A)

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.
Laboratory for Molecular Pathology of Psychiatric Disorders, RIKEN Center for Brain Science, Wako, Saitama, Japan.

Naomichi Matsumoto (N)

Department of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Kanagawa, Japan.

Joseph Buxbaum (J)

Department of Psychiatry, Mount Sinai University, New York, NY, USA.

Norio Ozaki (N)

Department of Psychiatry, Nagoya University Graduate School of Medicine, Nagoya, Aichi, Japan.
Institute for Glyco-core Research (iGCORE), Nagoya University, Chikusa-ku, Nagoya, Japan.

Jonathan Sebat (J)

Department of Psychiatry, University of California San Diego, San Diego, CA, USA.

Articles similaires

[Redispensing of expensive oral anticancer medicines: a practical application].

Lisanne N van Merendonk, Kübra Akgöl, Bastiaan Nuijen
1.00
Humans Antineoplastic Agents Administration, Oral Drug Costs Counterfeit Drugs

Smoking Cessation and Incident Cardiovascular Disease.

Jun Hwan Cho, Seung Yong Shin, Hoseob Kim et al.
1.00
Humans Male Smoking Cessation Cardiovascular Diseases Female
Humans United States Aged Cross-Sectional Studies Medicare Part C
1.00
Humans Yoga Low Back Pain Female Male

Classifications MeSH