Actin nano-architecture of phagocytic podosomes.


Journal

Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555

Informations de publication

Date de publication:
27 07 2022
Historique:
received: 10 01 2022
accepted: 13 07 2022
entrez: 27 7 2022
pubmed: 28 7 2022
medline: 30 7 2022
Statut: epublish

Résumé

Podosomes are actin-enriched adhesion structures important for multiple cellular processes, including migration, bone remodeling, and phagocytosis. Here, we characterize the structure and organization of phagocytic podosomes using interferometric photoactivated localization microscopy, a super-resolution microscopy technique capable of 15-20 nm resolution, together with structured illumination microscopy and localization-based super-resolution microscopy. Phagocytic podosomes are observed during frustrated phagocytosis, a model in which cells attempt to engulf micropatterned IgG antibodies. For circular patterns, this results in regular arrays of podosomes with well-defined geometry. Using persistent homology, we develop a pipeline for semi-automatic identification and measurement of podosome features. These studies reveal an hourglass shape of the podosome actin core, a protruding knob at the bottom of the core, and two actin networks extending from the core. Additionally, the distributions of paxillin, talin, myosin II, α-actinin, cortactin, and microtubules relative to actin are characterized.

Identifiants

pubmed: 35896550
doi: 10.1038/s41467-022-32038-0
pii: 10.1038/s41467-022-32038-0
pmc: PMC9329332
doi:

Substances chimiques

Actins 0
Talin 0
Myosin Type II EC 3.6.1.-

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

4363

Subventions

Organisme : NIGMS NIH HHS
ID : T32 GM008570
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM127145
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM122596
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM067553
Pays : United States
Organisme : NIBIB NIH HHS
ID : U01 EB018816
Pays : United States
Organisme : NINDS NIH HHS
ID : P30 NS045892
Pays : United States
Organisme : NICHD NIH HHS
ID : U54 HD079124
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States

Informations de copyright

© 2022. The Author(s).

Références

Science. 2015 Aug 28;349(6251):aab3500
pubmed: 26315442
Dev Cell. 2019 Aug 19;50(4):397-410.e3
pubmed: 31231039
Front Neuroanat. 2020 Oct 06;14:585793
pubmed: 33192345
J Cell Sci. 2009 Nov 1;122(Pt 21):3873-82
pubmed: 19808890
Methods Cell Biol. 2014;123:273-94
pubmed: 24974033
Exp Cell Res. 2006 Apr 1;312(6):760-9
pubmed: 16434035
Nat Methods. 2011 Nov 06;8(12):1027-36
pubmed: 22056676
CSH Protoc. 2008 Dec 01;2008:pdb.prot5080
pubmed: 21356739
J Virol. 2000 Nov;74(21):10074-80
pubmed: 11024136
Mol Biol Cell. 2013 Jul;24(13):2112-23
pubmed: 23637461
Mol Biol Cell. 2011 Sep;22(17):3120-6
pubmed: 21737683
J Cell Biol. 1984 Nov;99(5):1696-705
pubmed: 6436255
Nat Commun. 2014 Nov 11;5:5343
pubmed: 25385672
Cell Adh Migr. 2014;8(3):191-204
pubmed: 24714644
Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9648-53
pubmed: 10449748
Nat Commun. 2019 Nov 15;10(1):5171
pubmed: 31729386
J Exp Med. 1996 Aug 1;184(2):627-37
pubmed: 8760816
Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5311-5
pubmed: 22431626
Curr Protoc Immunol. 2008 Nov;Chapter 14:Unit 14.1
pubmed: 19016445
PLoS One. 2007 Jan 31;2(1):e179
pubmed: 17264882
Cell Rep. 2019 Dec 10;29(11):3385-3393.e6
pubmed: 31825823
Cell. 2016 Jan 14;164(1-2):128-140
pubmed: 26771488
J Cell Sci. 2019 Dec 13;132(24):
pubmed: 31836688
J Cell Sci. 2012 Apr 1;125(Pt 7):1666-72
pubmed: 22328507
Nat Methods. 2015 Mar;12(3):244-50, 3 p following 250
pubmed: 25599551
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Eur J Cell Biol. 2021 May;100(4):151161
pubmed: 33836409
Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3125-30
pubmed: 19202073
Proc Natl Acad Sci U S A. 2004 Mar 23;101(12):4083-8
pubmed: 15016920
J Cell Biol. 2015 Aug 31;210(5):737-51
pubmed: 26323690
Nature. 2003 Jul 10;424(6945):219-23
pubmed: 12853963
J Phys D Appl Phys. 2017 Feb 15;50(6):064002
pubmed: 28458398
J Cell Sci. 2012 May 1;125(Pt 9):2300-14
pubmed: 22344260
Mol Biol Cell. 2004 Dec;15(12):5231-41
pubmed: 15371537
J Cell Sci. 2005 May 15;118(Pt 10):2079-82
pubmed: 15890982
Methods. 2017 Feb 15;115:9-16
pubmed: 27840289
Mol Biol Cell. 2003 Feb;14(2):407-16
pubmed: 12589043
Eur J Cell Biol. 2020 Jun;99(5):151087
pubmed: 32646641
Cold Spring Harb Protoc. 2009 Jul;2009(7):pdb.prot5255
pubmed: 20147220
Nat Cell Biol. 2017 Feb;19(2):133-141
pubmed: 28114270
Trends Cell Biol. 2007 Mar;17(3):107-17
pubmed: 17275303
Cell Mol Life Sci. 2015 Jan;72(1):121-35
pubmed: 25300510
Nat Commun. 2022 Jul 4;13(1):3842
pubmed: 35789161
Front Immunol. 2011 Oct 12;2:51
pubmed: 22566841
Small GTPases. 2020 Jul;11(4):256-270
pubmed: 29172953
Nat Methods. 2012 May 13;9(7):727-9
pubmed: 22581370
Nature. 2010 Nov 25;468(7323):580-4
pubmed: 21107430
Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21016-21
pubmed: 21081699
Elife. 2021 Oct 28;10:
pubmed: 34708690
Blood. 2001 Aug 15;98(4):1142-9
pubmed: 11493463
Nat Methods. 2020 Sep;17(9):870-872
pubmed: 32814874

Auteurs

J Cody Herron (JC)

Curriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Shiqiong Hu (S)

Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Takashi Watanabe (T)

Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Division of Gene Regulation, Cancer Center, Fujita Health University, Toyoake, Aichi, Japan.

Ana T Nogueira (AT)

Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Bei Liu (B)

Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Megan E Kern (ME)

Department of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Jesse Aaron (J)

Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.

Aaron Taylor (A)

Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.

Michael Pablo (M)

Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Program in Molecular and Cellular Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Teng-Leong Chew (TL)

Advanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.

Timothy C Elston (TC)

Curriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. telston@med.unc.edu.
Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. telston@med.unc.edu.
Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. telston@med.unc.edu.

Klaus M Hahn (KM)

Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. khahn@med.unc.edu.
Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. khahn@med.unc.edu.

Articles similaires

Cerebrospinal Fluid Animals Liver Glymphatic System Spinal Cord
Animals Humans Mice Neoplasms Tumor Microenvironment
Microscopy Humans Artificial Intelligence Primary Health Care
Malaria, Vivax Peru Humans Recurrence Female

Classifications MeSH