Probing ligand binding of endothiapepsin by `temperature-resolved' macromolecular crystallography.
conformational heterogeneity
endothiapepsin
fragment binding
protein plasticity
room temperature macromolecular crystallography
Journal
Acta crystallographica. Section D, Structural biology
ISSN: 2059-7983
Titre abrégé: Acta Crystallogr D Struct Biol
Pays: United States
ID NLM: 101676043
Informations de publication
Date de publication:
01 Aug 2022
01 Aug 2022
Historique:
received:
21
12
2021
accepted:
09
06
2022
entrez:
2
8
2022
pubmed:
3
8
2022
medline:
4
8
2022
Statut:
ppublish
Résumé
Continuous developments in cryogenic X-ray crystallography have provided most of our knowledge of 3D protein structures, which has recently been further augmented by revolutionary advances in cryoEM. However, a single structural conformation identified at cryogenic temperatures may introduce a fictitious structure as a result of cryogenic cooling artefacts, limiting the overview of inherent protein physiological dynamics, which play a critical role in the biological functions of proteins. Here, a room-temperature X-ray crystallographic method using temperature as a trigger to record movie-like structural snapshots has been developed. The method has been used to show how TL00150, a 175.15 Da fragment, undergoes binding-mode changes in endothiapepsin. A surprising fragment-binding discrepancy was observed between the cryo-cooled and physiological temperature structures, and multiple binding poses and their interplay with DMSO were captured. The observations here open up new promising prospects for structure determination and interpretation at physiological temperatures with implications for structure-based drug discovery.
Identifiants
pubmed: 35916221
pii: S205979832200612X
doi: 10.1107/S205979832200612X
pmc: PMC9344481
doi:
Substances chimiques
Ligands
0
Macromolecular Substances
0
Proteins
0
Aspartic Acid Endopeptidases
EC 3.4.23.-
Endothia aspartic proteinase
EC 3.4.23.-
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
964-974Subventions
Organisme : Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
ID : 182369
Organisme : Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
ID : 198290
Organisme : Horizon 2020 Framework Programme
ID : 884104
Informations de copyright
open access.
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