Terminal heterocyst differentiation in the Anabaena patA mutant as a result of post-transcriptional modifications and molecular leakage.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
08 2022
Historique:
received: 17 01 2022
accepted: 05 07 2022
revised: 25 08 2022
pubmed: 16 8 2022
medline: 30 8 2022
entrez: 15 8 2022
Statut: epublish

Résumé

The Anabaena genus is a model organism of filamentous cyanobacteria whose vegetative cells can differentiate under nitrogen-limited conditions into a type of cell called heterocyst. These heterocysts lose the possibility to divide and are necessary for the colony because they can fix and share environmental nitrogen. In order to distribute the nitrogen efficiently, heterocysts are arranged to form a quasi-regular pattern whose features are maintained as the filament grows. Recent efforts have allowed advances in the understanding of the interactions and genetic mechanisms underlying this dynamic pattern. However, the main role of the patA and hetF genes are yet to be clarified; in particular, the patA mutant forms heterocysts almost exclusively in the terminal cells of the filament. In this work, we investigate the function of these genes and provide a theoretical model that explains how they interact within the broader genetic network, reproducing their knock-out phenotypes in several genetic backgrounds, including a nearly uniform concentration of HetR along the filament for the patA mutant. Our results suggest a role of hetF and patA in a post-transcriptional modification of HetR which is essential for its regulatory function. In addition, the existence of molecular leakage out of the filament in its boundary cells is enough to explain the preferential appearance of terminal heterocysts, without any need for a distinct regulatory pathway.

Identifiants

pubmed: 35969646
doi: 10.1371/journal.pcbi.1010359
pii: PCOMPBIOL-D-22-00070
pmc: PMC9410556
doi:

Substances chimiques

Bacterial Proteins 0
Nitrogen N762921K75

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1010359

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Références

PLoS One. 2009 Oct 12;4(10):e7371
pubmed: 19823574
Nat Rev Microbiol. 2010 Jan;8(1):39-50
pubmed: 19966815
Science. 1983 May 13;220(4598):671-80
pubmed: 17813860
Mol Microbiol. 2016 Feb;99(4):808-19
pubmed: 26552991
Mol Microbiol. 2013 Jun;88(6):1093-105
pubmed: 23663167
J Bacteriol. 2006 Mar;188(5):1808-16
pubmed: 16484191
J Bacteriol. 2001 Apr;183(8):2605-13
pubmed: 11274121
PLoS One. 2014 Aug 14;9(8):e104571
pubmed: 25121608
Arch Microbiol. 1998 May;169(5):417-23
pubmed: 9560423
J Bacteriol. 2005 Dec;187(24):8489-93
pubmed: 16321953
J Theor Biol. 2015 Apr 21;371:9-23
pubmed: 25665721
Mol Microbiol. 2010 Aug;77(3):562-74
pubmed: 20545862
Sci Rep. 2015 Nov 18;5:16470
pubmed: 26576507
J Bacteriol. 1994 Apr;176(8):2282-92
pubmed: 8157596
Proc Natl Acad Sci U S A. 2016 May 31;113(22):6218-23
pubmed: 27162328
J Bacteriol. 2007 Mar;189(6):2460-7
pubmed: 17220221
Proc Natl Acad Sci U S A. 1998 Apr 28;95(9):4959-63
pubmed: 9560210
FEMS Microbiol Lett. 1997 Jun 1;151(1):23-30
pubmed: 9198279
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5655-9
pubmed: 1608976
PLoS One. 2012;7(2):e31407
pubmed: 22363638
Mol Microbiol. 2018 Apr 20;:
pubmed: 29676808
Mol Microbiol. 2014 Dec;94(6):1260-71
pubmed: 25336355
Mol Microbiol. 2018 Dec;110(6):931-954
pubmed: 29885033
Mol Microbiol. 2012 Feb;83(4):682-93
pubmed: 22220907
Environ Microbiol. 2019 Jan;21(1):1-17
pubmed: 30066380
Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2729-34
pubmed: 11226308
Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10109-14
pubmed: 21628585
Front Microbiol. 2020 Jan 21;10:3140
pubmed: 32038573
J Bacteriol. 2014 Oct;196(19):3452-60
pubmed: 25049089
Biochemistry. 2012 Mar 27;51(12):2436-42
pubmed: 22397695
Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4848-53
pubmed: 15051891
J Bacteriol. 2008 Dec;190(23):7645-54
pubmed: 18835986
Life (Basel). 2020 Dec 04;10(12):
pubmed: 33291589
J Bacteriol. 2006 Dec;188(24):8520-5
pubmed: 17041048
J Bacteriol. 2010 Sep;192(18):4732-40
pubmed: 20622060
Genes Dev. 1991 Feb;5(2):321-30
pubmed: 1840555
Curr Top Dev Biol. 2008;81:1-63
pubmed: 18023723
J Bacteriol. 2004 Oct;186(19):6422-9
pubmed: 15375122
Mol Microbiol. 1993 Jul;9(1):77-84
pubmed: 8412673
PLoS Biol. 2018 May 4;16(5):e2004877
pubmed: 29727442
PLoS One. 2020 Jul 23;15(7):e0232383
pubmed: 32701963
Mol Microbiol. 2006 Jan;59(2):367-75
pubmed: 16390435
Dev Biol. 1975 Oct;46(2):370-82
pubmed: 810378
Dev Biol. 2007 Dec 1;312(1):427-34
pubmed: 17976569
J Cell Sci. 1973 May;12(3):707-23
pubmed: 4198321
Mol Microbiol. 2005 Jul;57(1):111-23
pubmed: 15948953
PLoS Comput Biol. 2015 Mar 27;11(3):e1004129
pubmed: 25816286
Plant Physiol. 2017 Jan;173(1):509-523
pubmed: 27899536
Phys Biol. 2014 Feb;11(1):016001
pubmed: 24384886
Proc Natl Acad Sci U S A. 2004 Nov 9;101(45):16040-5
pubmed: 15520378
FEMS Microbiol Rev. 2004 Oct;28(4):469-87
pubmed: 15374662
J Biol Dyn. 2010 Nov;4(6):621-33
pubmed: 22881208
Elife. 2020 Aug 07;9:
pubmed: 32762845
Biotechnol Prog. 2006 Nov-Dec;22(6):1532-40
pubmed: 17137298
PLoS Genet. 2015 Apr 01;11(4):e1005031
pubmed: 25830300
J Bacteriol. 2010 Feb;192(4):1088-96
pubmed: 20008074
Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E6984-E6992
pubmed: 27791130
J Bacteriol. 2015 Aug;197(16):2685-93
pubmed: 26055115
J Bacteriol. 2014 Dec;196(23):4026-35
pubmed: 25201945
J Bacteriol. 2012 May;194(9):2297-306
pubmed: 22389489
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19884-8
pubmed: 19897721
FEBS Lett. 2002 Apr 24;517(1-3):87-91
pubmed: 12062415
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15342-7
pubmed: 22949631
J Bacteriol. 2018 Jul 25;200(16):
pubmed: 29784882
Phys Biol. 2012 Feb;9(1):016007
pubmed: 22313598
J Bacteriol. 2018 Apr 9;200(9):
pubmed: 29440250
Science. 1998 Oct 30;282(5390):935-8
pubmed: 9794762
BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S16
pubmed: 19534741
J Bacteriol. 2005 Mar;187(6):1985-91
pubmed: 15743946
Mol Microbiol. 2001 May;40(4):941-50
pubmed: 11401701
J Bacteriol. 2001 Apr;183(8):2654-61
pubmed: 11274126
Bioinformatics. 2006 Jun 1;22(11):1297-301
pubmed: 16543275
Trends Microbiol. 2012 Nov;20(11):548-57
pubmed: 22898147
J Bacteriol. 2008 Sep;190(18):6126-33
pubmed: 18658268
Proc Natl Acad Sci U S A. 2013 May 7;110(19):E1716-23
pubmed: 23610410
J Bacteriol. 2002 Dec;184(24):6873-81
pubmed: 12446638
Environ Microbiol. 2020 Aug;22(8):3325-3338
pubmed: 32468657

Auteurs

Pau Casanova-Ferrer (P)

Grupo Interdisciplinar de Sistemas Complejos (GISC) and Departamento de Matemáticas, Universidad Carlos III de Madrid, Leganés, Spain.
Centro Nacional de Biotecnologia (CNB), CSIC, Madrid, Spain.

Saúl Ares (S)

Grupo Interdisciplinar de Sistemas Complejos (GISC) and Departamento de Matemáticas, Universidad Carlos III de Madrid, Leganés, Spain.
Centro Nacional de Biotecnologia (CNB), CSIC, Madrid, Spain.

Javier Muñoz-García (J)

Grupo Interdisciplinar de Sistemas Complejos (GISC) and Departamento de Matemáticas, Universidad Carlos III de Madrid, Leganés, Spain.

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